Bacteria are nearly ubiquitous, play vital roles in industry and the environment, and are important actors in both health and disease for humans and other organisms. They are also small, easily-manipulable model cells that can be used to study basic cell biological studies. Motile bacteria, including many important pathogens, constantly monitor their environment in order to swim towards nutrients and away from toxins, a process called chemotaxis. Attractants and repellents bind to chemoreceptors, which are typically found at the poles of cells grouped together in highly cooperative, ordered arrays. Activated chemoreceptor arrays phosphorylate a protein messenger which in turn binds to flagellar motors, governing the rate of motor reversals and, ultimately, whether the cell continues to move forward or changes direction. While powerful methods like X-ray crystallography and NMR spectrometry have revealed the structures of individual domains of certain chemoreceptors at near-atomic resolution, they have not revealed how the chemoreceptors are arranged inside living cells or the structural basis of array cooperativity. Instead, we have begun to address these issues with an emerging technology, electron cryotomography, which can produce 3-D reconstructions of intact bacterial cells at """"""""macromolecular"""""""" (1-5 nm) resolution, which is sufficient to visualize individual receptor dimers. Briefly, bacterial cultures are plunge-frozen in thin films across EM grids and then imaged from a range of angles as the sample is tilted incrementally around one or two axes. 3-D reconstructions are then calculated from the images, and sub-regions with common features can be averaged to increase the signal-to-noise ratio. Following recent work in which we showed that bacterial chemoreceptor arrays are universally arranged in a conserved, 12-nm hexameric lattice of trimers-of-receptor-dimers, here we propose to extend that work in resolution and by imaging fully-activated and -deactivated states. This should reveal how the proteins are arranged within the array as well as the structural basis of activation and array cooperativity. This information will in turn help us understand how bacteria accomplish their roles in health and disease and perhaps suggest new antibiotic targets or strategies.
Many bacteria can swim towards nutrients and away from toxins by sensing how the concentrations of these molecules change in their environment as they move forward. We propose to image the protein machines responsible for this ability with an emerging technology, electron cryotomography. Understanding the molecular mechanisms may suggest new targets or strategies to combat bacterial infections, and will reveal basic principles of how cells sense and respond to their environments, ultimately helping us understand and combat other diseases such as chronic inflammation, cancer, and diabetes.
|Oikonomou, Catherine M; Jensen, Grant J (2017) Cellular Electron Cryotomography: Toward Structural Biology In Situ. Annu Rev Biochem 86:873-896|
|Briegel, Ariane; Ortega, Davi R; Mann, Petra et al. (2016) Chemotaxis cluster 1 proteins form cytoplasmic arrays in Vibrio cholerae and are stabilized by a double signaling domain receptor DosM. Proc Natl Acad Sci U S A 113:10412-7|
|Oikonomou, Catherine M; Chang, Yi-Wei; Jensen, Grant J (2016) A new view into prokaryotic cell biology from electron cryotomography. Nat Rev Microbiol 14:205-20|
|Tocheva, Elitza I; Ortega, Davi R; Jensen, Grant J (2016) Sporulation, bacterial cell envelopes and the origin of life. Nat Rev Microbiol 14:535-542|
|Briegel, Ariane; Ortega, Davi R; Huang, Audrey N et al. (2015) Structural conservation of chemotaxis machinery across Archaea and Bacteria. Environ Microbiol Rep 7:414-9|
|Briegel, Ariane; Wong, Margaret L; Hodges, Heather L et al. (2014) New insights into bacterial chemoreceptor array structure and assembly from electron cryotomography. Biochemistry 53:1575-85|
|Briegel, Ariane; Ladinsky, Mark S; Oikonomou, Catherine et al. (2014) Structure of bacterial cytoplasmic chemoreceptor arrays and implications for chemotactic signaling. Elife 3:e02151|
|Briegel, Ariane; Ames, Peter; Gumbart, James C et al. (2013) The mobility of two kinase domains in the Escherichia coli chemoreceptor array varies with signalling state. Mol Microbiol 89:831-41|