The role of horizontal gene transfer in eukaryotic evolution remains one of the most hotly debated topics in evolutionary biology. While several claims of massive horizontal transfer in eukaryotes have been disproven in recent years, rotifers of the class Bdelloidea, with 8-10% of their genes coming from non-metazoan sources, remain the only metazoan taxon that withstands the scrutiny. Our work has confirmed the presence and functionality of a non-canonical system of epigenetic modification of bacterial origin, capable of introducing bacterial modification marks into eukaryotic DNA. Further, we identified genes of foreign origin that may serve as potential sources of diversification in the expanded system of secondary metabolism. Finally, with desiccation no longer suspected as the leading reason defining the unusual ability of bdelloids to capture foreign genetic material, we are investigating novel types of giant transposable elements that may have participated in gene transfer. These lines of investigation will be pursued and combined to uncover the complex evolutionary history of foreign gene acquisition and diversification in this exceptional metazoan taxon, and to better understand how the barriers preventing such acquisition in most eukaryotic taxa can occasionally be broken in selected branches of the metazoan tree of life. !

Public Health Relevance

Horizontal gene transfer is the movement of genetic material between organisms that differs from vertical transfer, the usual way of transmission from parents to offspring. While it is prevalent in bacteria, it occurs only rarely in multicellular animals. We are investigating the ways in which it can re-shape the evolution and biological properties of metazoans capable of capturing genes from representatives of other kingdoms and domains of life, and the means by which genetic information can be transferred through the well-protected metazoan germ line.

Agency
National Institute of Health (NIH)
Institute
National Institute of General Medical Sciences (NIGMS)
Type
Research Project (R01)
Project #
2R01GM111917-05
Application #
9616538
Study Section
Special Emphasis Panel (ZRG1)
Program Officer
Janes, Daniel E
Project Start
2014-08-01
Project End
2022-06-30
Budget Start
2018-07-01
Budget End
2019-06-30
Support Year
5
Fiscal Year
2018
Total Cost
Indirect Cost
Name
Marine Biological Laboratory
Department
Type
DUNS #
001933779
City
Woods Hole
State
MA
Country
United States
Zip Code
Arkhipova, Irina R (2018) Neutral Theory, Transposable Elements, and Eukaryotic Genome Evolution. Mol Biol Evol 35:1332-1337
Rodriguez, Fernando; Arkhipova, Irina R (2018) Transposable elements and polyploid evolution in animals. Curr Opin Genet Dev 49:115-123
Abrams, John M; Arkhipova, Irina R; Belfort, Marlene et al. (2018) Meeting report: mobile genetic elements and genome plasticity 2018. Mob DNA 9:21
Arkhipova, Irina R (2017) Using bioinformatic and phylogenetic approaches to classify transposable elements and understand their complex evolutionary histories. Mob DNA 8:19
Rodriguez, Fernando; Kenefick, Aubrey W; Arkhipova, Irina R (2017) LTR-Retrotransposons from Bdelloid Rotifers Capture Additional ORFs Shared between Highly Diverse Retroelement Types. Viruses 9:
Arkhipova, Irina R; Yushenova, Irina A; Rodriguez, Fernando (2017) Giant Reverse Transcriptase-Encoding Transposable Elements at Telomeres. Mol Biol Evol 34:2245-2257
Arkhipova, Irina R; Rice, Phoebe A (2016) Mobile genetic elements: in silico, in vitro, in vivo. Mol Ecol 25:1027-31
Rodriguez, Fernando; Arkhipova, Irina R (2016) Multitasking of the piRNA Silencing Machinery: Targeting Transposable Elements and Foreign Genes in the Bdelloid Rotifer Adineta vaga. Genetics 203:255-68