miRNAs are one of the key post-transcriptional regulators of gene expression and play a role in a wide range of biological processes including development, cell proliferation, cell differentiation, metabolism and apoptosis. We have previously deduced the mechanism and relative timing of several cellular events during miRNA- induced translational repression. Here, we will focus on elucidating mechanisms that modulate this regulatory pathway. Variations in the level of miRNA-induced gene regulation are observed in both reporter and global- based approaches, leading us to ask why and how these differences exist. Using our inducible and controllable in vivo reporter systems, as well as in vitro techniques, we will investigate the effects of mRNA target intrinsic stability on the kinetic and dissect contributions of miRICS components in the process of miRNA-mediated gene silencing. We will employ this system with a variety of modified and natural reporter genes to get a more complete picture of the relationships between distinct RNA binding proteins and miRNA pathway components on gene regulation. We will use our newly developed assays and techniques to deduce the molecular mechanisms for modulation of miRNA-mediated gene silencing by these RNA-binding proteins. Finally, these studies will be followed by genome-wide approaches in a biological context that will allow us to investigate the importance of cis and trans factors on the modulation of specific miRNA response across endogenous gene targets. In addition to vastly expanding our knowledge about miRNA-mediated gene silencing, the proposed work will give us more clues as to how alterations in systems that modulate miRNA response may influence cellular homeostasis in regular and pathological states.

Public Health Relevance

MicroRNAs are key regulators of gene expression that have important roles in a wide range of biological processes. The main goal of the proposed research is to define cellular mechanisms used to modulate the process of miRNA-mediated gene silencing. Using our controllable in vivo and in vitro systems, we will show how the intrinsic stability of mRNA and binding of different RNA binding proteins can lead to alterations in miRNA-mediated gene silencing. These studies will ultimately give insight into the complexity of gene regulation at the level of translation and will be relevant to the better understanding of alterations in these regulatory mechanisms that may lead to various pathological states.

Agency
National Institute of Health (NIH)
Institute
National Institute of General Medical Sciences (NIGMS)
Type
Research Project (R01)
Project #
5R01GM112824-02
Application #
9132318
Study Section
Molecular Genetics B Study Section (MGB)
Program Officer
Bender, Michael T
Project Start
2015-09-01
Project End
2020-08-31
Budget Start
2016-09-01
Budget End
2017-08-31
Support Year
2
Fiscal Year
2016
Total Cost
$320,253
Indirect Cost
$110,251
Name
Washington University
Department
Anatomy/Cell Biology
Type
Schools of Medicine
DUNS #
068552207
City
Saint Louis
State
MO
Country
United States
Zip Code
63130
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Arthur, Laura L; Djuranovic, Sergej (2018) PolyA tracks, polybasic peptides, poly-translational hurdles. Wiley Interdiscip Rev RNA :e1486
Cottrell, Kyle A; Szczesny, Pawel; Djuranovic, Sergej (2017) Translation efficiency is a determinant of the magnitude of miRNA-mediated repression. Sci Rep 7:14884
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