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Johnson, L Steven; Eddy, Sean R; Portugaly, Elon (2010) Hidden Markov model speed heuristic and iterative HMM search procedure. BMC Bioinformatics 11:431
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Nawrocki, Eric P; Kolbe, Diana L; Eddy, Sean R (2009) Infernal 1.0: inference of RNA alignments. Bioinformatics 25:1335-7
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Nawrocki, Eric P; Eddy, Sean R (2007) Query-dependent banding (QDB) for faster RNA similarity searches. PLoS Comput Biol 3:e56
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Dowell, Robin D; Eddy, Sean R (2006) Efficient pairwise RNA structure prediction and alignment using sequence alignment constraints. BMC Bioinformatics 7:400
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Darnell, Jennifer C; Fraser, Claire E; Mostovetsky, Olga et al. (2005) Kissing complex RNAs mediate interaction between the Fragile-X mental retardation protein KH2 domain and brain polyribosomes. Genes Dev 19:903-18
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Dowell, Robin D; Eddy, Sean R (2004) Evaluation of several lightweight stochastic context-free grammars for RNA secondary structure prediction. BMC Bioinformatics 5:71
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Klein, Robert J; Eddy, Sean R (2003) RSEARCH: finding homologs of single structured RNA sequences. BMC Bioinformatics 4:44
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McCutcheon, John P; Eddy, Sean R (2003) Computational identification of non-coding RNAs in Saccharomyces cerevisiae by comparative genomics. Nucleic Acids Res 31:4119-28
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Showing the most recent 10 out of 22 publications
