| Huang, Xiaoqiu; Brutlag, Douglas L (2007) Dynamic use of multiple parameter sets in sequence alignment. Nucleic Acids Res 35:678-86 |
| Wang, Jianmin; Huang, Xiaoqiu (2005) A method for finding single-nucleotide polymorphisms with allele frequencies in sequences of deep coverage. BMC Bioinformatics 6:220 |
| Ye, Liang; Huang, Xiaoqiu (2005) MAP2: multiple alignment of syntenic genomic sequences. Nucleic Acids Res 33:162-70 |
| Huang, Xiaoqiu; Ye, Liang; Chou, Hui-Hsien et al. (2004) Efficient combination of multiple word models for improved sequence comparison. Bioinformatics 20:2529-33 |
| Huang, Xiaoqiu; Wang, Jianmin; Aluru, Srinivas et al. (2003) PCAP: a whole-genome assembly program. Genome Res 13:2164-70 |
| Lin, Yaw-Ling; Huang, Xiaoqiu; Jiang, Tao et al. (2003) MAVG: locating non-overlapping maximum average segments in a given sequence. Bioinformatics 19:151-2 |
| Huang, Xiaoqiu; Chao, Kun-Mao (2003) A generalized global alignment algorithm. Bioinformatics 19:228-33 |
| Huang, X; Madan, A (1999) CAP3: A DNA sequence assembly program. Genome Res 9:868-77 |
| Huang, X; Adams, M D; Zhou, H et al. (1997) A tool for analyzing and annotating genomic sequences. Genomics 46:37-45 |
