A new mass spectrometric approach is proposed for rapid readout of Sanger dideoxy DNA sequence ladders. Ions will be generated using the relatively new technique known as Massive Cluster Impact (MCI) desorption. MCI generates vapor-phase ions from solid or liquid (solution) targets by the hypervelocity impact of massive, highly-charged glycerol or water dusters produced in vacuum by an electrospray process. The hypervelocity cluster impact has been shown to shock-heat and desorb massive biomolecular ions with a low degree of internal excitation and consequently long lifetimes, allowing mass spectrometric detection with good mass resolution. Ions arc generated in vacuum, allowing efficient transport into the mass spectrometer and minimizing sample size requirements. The initial extent of multiple charging in the desorbed ions is relatively low. To accomplish these studies, a cluster ion source and sample introduction system will be interfaced to a time-of-flight mass spectrometer with pulsed orthogonal ion extraction and an ion reflector for high mass resolution. Methods to control the degree of charging will be investigated: these include varying the cluster charge and energy, and doping the target and/or the cluster feed liquid with proton donors or acceptors to perturb the competition of the DNA analyte for charged solution species or the excess protons carried into the surface by the impacting cluster. Facile charge control which minimizes multiple charging should allow optimized analyses of multicomponent DNA sequence ladder mixtures. To investigate the competing roles of cluster charge and ionization equilibria in determining analyte ion charge multiplicity, experiments will also be performed in which analyte-containing clusters are electrosprayed and desolvated by impact on clean solid and liquid targets. MCI desorption of DNA from affinity capture surfaces will be investigated, in order to facilitate sample cleanup and minimize sample size requirements.

Agency
National Institute of Health (NIH)
Institute
National Human Genome Research Institute (NHGRI)
Type
Research Project (R01)
Project #
5R01HG001875-02
Application #
6138896
Study Section
Genome Study Section (GNM)
Program Officer
Graham, Bettie
Project Start
1999-01-01
Project End
2001-12-31
Budget Start
2000-01-01
Budget End
2001-12-31
Support Year
2
Fiscal Year
2000
Total Cost
$161,290
Indirect Cost
Name
Arizona State University-Tempe Campus
Department
Chemistry
Type
Schools of Arts and Sciences
DUNS #
943360412
City
Tempe
State
AZ
Country
United States
Zip Code
85287
Aksyonov, S; Williams, P (2001) Electrospray ionization using disposable plastic pipette tips. Rapid Commun Mass Spectrom 15:1890-1
Aksyonov, S A; Williams, P (2001) Impact desolvation of electrosprayed microdroplets--a new ionization method for mass spectrometry of large biomolecules. Rapid Commun Mass Spectrom 15:2001-6