Normal B cell development depends on the proper assembly of immunoglobulin heavy- and light-chain genes from their component gene segments by the V(D)J recombinase. The process is regulated such that an individual mature B cell express a single antigen receptor specificity, a phenomenon known as allelic exclusion. Previous research has uncovered roles for transcriptional regulatory DNA sequences, chromatin structure, and the assembled Ig chains themselves in the regulation of V(D)J recombination. We propose a series of experiments aimed at understanding how the V(D)J recombinase is regulated during B cell development. RAG1 and RAG2 are the only two known essential lymphoid-specific components of the V(D)J recombinase. They are coordinately expressed only in B and T lymphocytes, where transcript levels vary at different stages of development. Inactivation of RAG gene expression is presumably essential for allelic exclusion and continued RAG gene expression is critical for receptor editing. We have identified key sequences and transcription factors necessary for activity of the murine RAG2 promoter. In addition, we have discovered a RAG locus transcriptional enhancer. We plan to determine the role of this novel enhancer in the developmental regulation of RAG gene expression, and identity additional DNA elements and transcription factors required for regulation of transcription of these important genes. Pre-B cells express high levels of V(D)J recombinase activity, yet they only rearrange one of their two allelic Ig kappa loci. We propose experiments to test the hypothesis that only a small traction of kappa alleles is accessible to the V(D)J recombinase in pre-B cells, making it very unlikely that a single pre-B cell would have two accessible alleles. Our experiments involve the analysis of a novel mouse model system that expresses a GFP cDNA from within a germline kappa transcript. In addition, we will use an experimental system in which overexpression of the transcription factor E47 activates germline kappa locus transcription and recombinase accessibility in a non-lymphoid cell to identity factors and target sequences responsible for the changes in kappa locus chromatin structure which lead to accessibility. In the final aim, we propose a series of preliminary experiments aimed at understanding the regulation of the VH-to-DJH rearrangement step in lymphoid development. We will a) scan the -90 kb interval between VHQ52 and DFL16.1 for DNA sequences involved in regulating VH-to-DJH rearrangement, b) determine whether a Pax-5 (BSAP)-expressing transgene can activate VH-to-DJH rearrangement in developing T cells and c) use a FISH assay to determine whether either of the two heavy-chain alleles in pro-B or pre-B cells is associated with heterochromatic regions of the nucleus

Agency
National Institute of Health (NIH)
Institute
National Heart, Lung, and Blood Institute (NHLBI)
Type
Research Project (R01)
Project #
2R01HL048702-10
Application #
6430438
Study Section
Allergy and Immunology Study Section (ALY)
Program Officer
Thomas, John
Project Start
1993-12-01
Project End
2006-11-30
Budget Start
2001-12-01
Budget End
2002-11-30
Support Year
10
Fiscal Year
2002
Total Cost
$333,431
Indirect Cost
Name
University of California Berkeley
Department
Biochemistry
Type
Schools of Arts and Sciences
DUNS #
094878337
City
Berkeley
State
CA
Country
United States
Zip Code
94704
Timblin, Greg A; Xie, Liangqi; Tjian, Robert et al. (2017) Dual Mechanism of Rag Gene Repression by c-Myb during Pre-B Cell Proliferation. Mol Cell Biol 37:
Vettermann, Christian; Timblin, Greg A; Lim, Vivian et al. (2015) The proximal J kappa germline-transcript promoter facilitates receptor editing through control of ordered recombination. PLoS One 10:e0113824
Chow, Kwan T; Schulz, Danae; McWhirter, Sarah M et al. (2013) Gfi1 and gfi1b repress rag transcription in plasmacytoid dendritic cells in vitro. PLoS One 8:e75891
Timblin, Greg A; Schlissel, Mark S (2013) Ebf1 and c-Myb repress rag transcription downstream of Stat5 during early B cell development. J Immunol 191:4676-87
Chow, Kwan T; Timblin, Greg A; McWhirter, Sarah M et al. (2013) MK5 activates Rag transcription via Foxo1 in developing B cells. J Exp Med 210:1621-34
Garcia, Patty B; Cai, Amie; Bates, Jamie G et al. (2012) miR290-5p/292-5p activate the immunoglobulin kappa locus in B cell development. PLoS One 7:e43805
Schulz, Danae; Vassen, Lothar; Chow, Kwan T et al. (2012) Gfi1b negatively regulates Rag expression directly and via the repression of FoxO1. J Exp Med 209:187-99
Bednarski, Jeffrey J; Nickless, Andrew; Bhattacharya, Deepta et al. (2012) RAG-induced DNA double-strand breaks signal through Pim2 to promote pre-B cell survival and limit proliferation. J Exp Med 209:11-7
Bates, Jamie G; Salzman, Julia; May, Damon et al. (2012) Extensive gene-specific translational reprogramming in a model of B cell differentiation and Abl-dependent transformation. PLoS One 7:e37108
Guo, Chunguang; Yoon, Hye Suk; Franklin, Andrew et al. (2011) CTCF-binding elements mediate control of V(D)J recombination. Nature 477:424-30

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