Epigenetic inheritance of the state of gene transcription relies on the conservation of the structure of chromatin through cell cycle stages during cell proliferation. Epigenetic information and structure of chromatin change during early stages of cell differentiation; this results in the activation of novel gene expression programs tht are propagated by proliferating progenitor cells. Differentiation of multipotent progenitors into myeloid or erythroid lineage-committed progenitors induces new transcriptional programs that are triggered by newly activated C/EBP?, PU.1 and GATA-1 transcription factors that bind to DNA in a sequence-specific manner. However, it is unknown whether the structure of chromatin plays a role in the initial association of these transcription factors with DNA. Using new experimental approaches to study epigenetic marking and re- assembly of proteins after DNA replication, we discovered that, compared to cytokine-treated cells, multipotent CD34+ progenitors (MPPs) are characterized by delayed maturation of chromatin following DNA replication. Based on our preliminary data, we propose that this creates a uniquely open post-replicative structure of chromatin that may explain the biological plasticity of multipotent hematopoietic progenitors. Molecularly, this plasticity may reflect facilitated association of key transcription factors, like C/EBP?, PU.1 and GATA-1 in multipotent CD34+ cells, to nascent DNA during initial stages of lineage commitment. By contrast, stem cell- enriched CD34+ cells have a more compact chromatin conformation, suggesting a model whereby changes in chromatin maturation may be essential for differentiation of hematopoietic stem cells (HSCs). We propose to test this model by investigating: i) the kinetics of induction and DNA association of transcription factors in cytokine-treated stem cell-enriched and multipotent CD34+ hematopoietic cells; ii) maturation and re- assembly of chromatin during cytokine-dependent differentiation of stem cell-enriched and multipotent CD34+ cells; iii) the role of chromatin conformation at early stages of replication for the association of transcription factors during differentiation and lineage choice of stem cell-enriched and multipotent CD34+ cells. If the proposed model of chromatin conformation `dynamics' during differentiation of HSCs and lineage commitment of MPPs is correct, these studies will have important implications for understanding the process of HSC differentiation and lineage choice in normal cells, and, perhaps, the aberrant differentiation of leukemic cells.

Public Health Relevance

In this application, we propose to investigate features of chromatin during cytokine-induced differentiation of stem cell-enriched (HSCs) and multipotent (MPPs) CD34+ hematopoietic cells. Based on our preliminary data, we suggest that MPPs possess a uniquely open chromatin structure just after DNA replication. This open structure of post-replicative chromatin may explain the biological plasticity of these cells, as it facilitates recruitment of transcription factors that are essential for commitment to a specific cell lineage.

National Institute of Health (NIH)
National Heart, Lung, and Blood Institute (NHLBI)
Research Project (R01)
Project #
Application #
Study Section
Special Emphasis Panel (ZRG1-VH-B (02))
Program Officer
Thomas, John
Project Start
Project End
Budget Start
Budget End
Support Year
Fiscal Year
Total Cost
Indirect Cost
Thomas Jefferson University
Schools of Medicine
United States
Zip Code
Petruk, Svetlana; Cai, Jingli; Sussman, Robyn et al. (2017) Delayed Accumulation of H3K27me3 on Nascent DNA Is Essential for Recruitment of Transcription Factors at Early Stages of Stem Cell Differentiation. Mol Cell 66:247-257.e5
Akishina, Angelina A; Vorontsova, Julia E; Cherezov, Roman O et al. (2017) Xenobiotic-induced activation of human aryl hydrocarbon receptor target genes in Drosophila is mediated by the epigenetic chromatin modifiers. Oncotarget 8:102934-102947
Petruk, Svetlana; Mariani, Samanta A; De Dominici, Marco et al. (2017) Structure of Nascent Chromatin Is Essential for Hematopoietic Lineage Specification. Cell Rep 19:295-306
Petruk, Svetlana; Fenstermaker, Tyler K; Black, Kathryn L et al. (2016) Detection of RNA-DNA association by a proximity ligation-based method. Sci Rep 6:27313
L Black, Kathryn; Petruk, Svetlana; Fenstermaker, Tyler K et al. (2016) Chromatin proteins and RNA are associated with DNA during all phases of mitosis. Cell Discov 2:16038