We have seen the emergence of a generation of medical terminologies satisfying systematic inheritance of relationships. Examples include SNOMED CT (the Systematized Nomenclature of Medicine - Clinical Terms), the National Cancer Institute Thesaurus (NCIT), Kaiser's Convergent Medical Terminology (CMT), the VA's internal enterprise terminology, the Foundational Model of Anatomy (FMA), and the Medical Entities Dictionary (MED). These terminologies are of substantial size and complexity. Due to this, user orientation is difficult, especially given the fact that more knowledge is continually being added to them. Orientation and navigation capabilities are essential for effective terminology maintenance and usage (for example, in decision-support systems, patient records, and healthcare administrative systems). One cannot reasonably be expected to maintain or use a terminology reliably without them. We propose to design structural abstraction methodologies to derive novel terminological views called """"""""taxonomies."""""""" These will form the bases for new techniques to support user orientation to and navigation of terminologies. The taxonomies will further aid in efficient auditing. A number of different levels of taxonomy will be developed. Our methodologies will utilize the IS-A relationship hierarchies and accompanying systematic relationship inheritance of this generation of terminologies. They will be based on new partitioning techniques, which will break down large collections of concepts into smaller units of structurally and semantically similar concepts that can be more easily handled and comprehended. One partitioning technique will be based on similar relationship structure, leading to the derivation of an abstraction network call the """"""""area taxonomy."""""""" Another will further utilize semantic similarity based on common ancestry in the terminology's ISA hierarchy leading to the finer-grained """"""""p-area taxonomy."""""""" Additional partitioning techniques---leading to further refined taxonomies---will focus on other structural features of terminologies, such as obtainment-pattern regions. Our abstraction methodologies will be general and applicable to a wide range of terminologies satisfying systematic inheritance. We will use SNOMED and the NCIT's genomics hierarchies as test-beds. We will demonstrate the utility of our taxonomy-based methodologies by defining various complexity measures with respect to the underlying terminology networks and by tracking terminology evolution.

Agency
National Institute of Health (NIH)
Institute
National Library of Medicine (NLM)
Type
Research Project (R01)
Project #
3R01LM008912-03S2
Application #
8077022
Study Section
Special Emphasis Panel (ZLM1-ZH-S (M3))
Program Officer
Sim, Hua-Chuan
Project Start
2010-06-01
Project End
2011-08-31
Budget Start
2010-06-01
Budget End
2011-08-31
Support Year
3
Fiscal Year
2010
Total Cost
$64,369
Indirect Cost
Name
Rutgers University
Department
Biostatistics & Other Math Sci
Type
Other Domestic Higher Education
DUNS #
075162990
City
Newark
State
NJ
Country
United States
Zip Code
07102
Ochs, Christopher; Perl, Yehoshua; Geller, James et al. (2013) Scalability of abstraction-network-based quality assurance to large SNOMED hierarchies. AMIA Annu Symp Proc 2013:1071-80
Wang, Yue; Halper, Michael; Wei, Duo et al. (2012) Auditing complex concepts of SNOMED using a refined hierarchical abstraction network. J Biomed Inform 45:1-14
He, Zhe; Halper, Michael; Perl, Yehoshua et al. (2012) Clinical Clarity versus Terminological Order - The Readiness of SNOMED CT Concept Descriptors for Primary Care. MIXHS 12 (2012) 2012:1-6
Geller, James; Ochs, Christopher; Perl, Yehoshua et al. (2012) New abstraction networks and a new visualization tool in support of auditing the SNOMED CT content. AMIA Annu Symp Proc 2012:237-46
Wang, Yue; Halper, Michael; Wei, Duo et al. (2012) Abstraction of complex concepts with a refined partial-area taxonomy of SNOMED. J Biomed Inform 45:15-29
Elhanan, Gai; Perl, Yehoshua; Geller, James (2011) A survey of SNOMED CT direct users, 2010: impressions and preferences regarding content and quality. J Am Med Inform Assoc 18 Suppl 1:i36-44
Wei, Duo; Bodenreider, Olivier (2010) Using the abstraction network in complement to description logics for quality assurance in biomedical terminologies - a case study in SNOMED CT. Stud Health Technol Inform 160:1070-4
Wei, Duo; Halper, Michael; Elhanan, Gai et al. (2009) Auditing SNOMED relationships using a converse abstraction network. AMIA Annu Symp Proc 2009:685-9
Wang, Yue; Wei, Duo; Xu, Junchuan et al. (2008) Auditing complex concepts in overlapping subsets of SNOMED. AMIA Annu Symp Proc :273-7
Wei, Duo; Wang, Yue; Perl, Yehoshua et al. (2008) Complexity measures to track the evolution of a SNOMED hierarchy. AMIA Annu Symp Proc :778-82