Biosurveillance Utilizing SNOMED-CT Based Natural Language Processing

Elkin, Peter L.

Abstract

Funding Agency

• Agency: National Institute of Health (NIH)
• Institute: Public Health Practice Program Office (PHPPO)
• Type: Research Project (R01)
• Project #: 5R01PH000022-02
• Application #: 7119574
• Study Section: Special Emphasis Panel (ZPH1-SRC (99))
• Program Officer: Cyril, Juliana K
• Project Start: 2005-09-30
• Project End: 2008-09-29
• Budget Start: 2006-09-30
• Budget End: 2007-09-29
• Support Year: 2
• Fiscal Year: 2006
• Total Cost: $834,535

Institution

• Name: Mayo Clinic, Rochester
• DUNS #: 006471700
• City: Rochester
• State: MN
• Country: United States
• Zip Code: 55905

Publications

Elkin, Peter L; Froehling, David A; Wahner-Roedler, Dietlind L et al. (2012) Comparison of natural language processing biosurveillance methods for identifying influenza from encounter notes. Ann Intern Med 156:11-8

Matheny, Michael E; Fitzhenry, Fern; Speroff, Theodore et al. (2012) Detection of infectious symptoms from VA emergency department and primary care clinical documentation. Int J Med Inform 81:143-56

Elkin, Peter L; Frankel, Andrew; Liebow-Liebling, Ester H et al. (2012) Bioprospecting the Bibleome: Adding Evidence to Support the Inflammatory Basis of Cancer. Metabolomics (Los Angel) 2:

Montella, Diane; Brown, Steven H; Elkin, Peter L et al. (2011) Comparison of SNOMED CT versus Medcin terminology concept coverage for mild Traumatic Brain Injury. AMIA Annu Symp Proc 2011:969-78

Trusko, Brett; Rosenbloom, S Trent; Montella, Diane et al. (2010) Are posttraumatic stress disorder mental health terms found in SNOMED-CT medical terminology. J Trauma Stress 23:794-801

Elkin, Peter L; Froehling, David; Wahner-Roedler, Dietlind et al. (2010) The Health Archetype Language (HAL-42): interface considerations. Int J Med Inform 79:e71-5

Elkin, Peter L; Liebow, Mark; Bauer, Brent A et al. (2010) The introduction of a diagnostic decision support system (DXplain™) into the workflow of a teaching hospital service can decrease the cost of service for diagnostically challenging Diagnostic Related Groups (DRGs). Int J Med Inform 79:772-7

Matheny, Michael E; Fitzhenry, Fern; Speroff, Theodore et al. (2009) Detection of blood culture bacterial contamination using natural language processing. AMIA Annu Symp Proc 2009:411-5

Rosenbloom, S Trent; Brown, Steven H; Froehling, David et al. (2009) Using SNOMED CT to represent two interface terminologies. J Am Med Inform Assoc 16:81-8

Elkin, Peter L; Tuttle, Mark S; Trusko, Brett E et al. (2009) BioProspecting: novel marker discovery obtained by mining the bibleome. BMC Bioinformatics 10 Suppl 2:S9