In response to the critical and growing threat posed by microbial antibiotic resistance, the NIAID has made basic research leading to better understanding of resistance factors a top priority. The Gram-negative non-fermenting microbe Acinetobacter baumannii has developed resistance to multiple classes of antibiotics in the last 15-20 years, leading the Center for Disease Control to label it a serious domestic threat. While many of the basic resistance mechanisms have been extensively studied, newly emerging mechanisms threaten the dwindling therapeutic options. We plan to study how modifications in three A. baumannii enzyme families are enhancing this organism's ability to destroy (or become insensitive) to our most potent antimicrobial agents including carbapenems, advanced generation cephalosporins and monobactams. Preliminary data in our lab has shown that mutations in OXA-51-like class D ?-lactamases have led to enhanced hydrolytic activity against carbapenems. In our proposed studies we will use mutagenesis, kinetic assays and X-ray crystallography to understand how these variant enzymes lead to stronger enzymatic activity. We will explore similar clinical mutations in the OXA-23 and OXA-24/40 class D ? -lactamase subfamilies, investigating in particular how these mutations affect the breakdown of multiple classes of ? -lactam antibiotics. Lastly, we will study known mutations in one of the key target proteins for ? -lactam antibiotics in Acinetobacter spp: penicillin-binding protein 3 (PBP3). It i likely that these clinical mutations are making PBP3 less sensitive to these antibiotics, and thus making the organism less responsive to treatment. Ultimately, by discovering the structural and mechanistic details of how these enzymes are mutating to become more dangerous, we hope to provide direction for the design of more effective antibiotics and -lactamase inhibitors. 1

Public Health Relevance

Bacterial resistance to -lactam antibiotics continues to grow at an alarming rate, rapidly threatening the efficacy of old and new treatments alike. Treating physicians are especially concerned about emerging threats in the problematic Gram-negative species Acinetobacter baumannii. The research proposed in this grant will illuminate how proteins in this species are evolving to become more dangerous, and will aid in the design of more effective antibiotics and -lactamase inhibitors. 1

Agency
National Institute of Health (NIH)
Institute
National Institute of Allergy and Infectious Diseases (NIAID)
Type
Academic Research Enhancement Awards (AREA) (R15)
Project #
2R15AI082416-03
Application #
8878533
Study Section
Special Emphasis Panel (ZRG1)
Program Officer
Xu, Zuoyu
Project Start
2009-03-15
Project End
2018-04-30
Budget Start
2015-05-01
Budget End
2018-04-30
Support Year
3
Fiscal Year
2015
Total Cost
Indirect Cost
Name
Grand Valley State University
Department
Chemistry
Type
Schools of Arts and Sciences
DUNS #
059692996
City
Allendale
State
MI
Country
United States
Zip Code
49401
Harper, Thomas M; June, Cynthia M; Taracila, Magdalena A et al. (2018) Multiple substitutions lead to increased loop flexibility and expanded specificity in Acinetobacter baumannii carbapenemase OXA-239. Biochem J 475:273-288
June, Cynthia M; Muckenthaler, Taylor J; Schroder, Emma C et al. (2016) The structure of a doripenem-bound OXA-51 class D ?-lactamase variant with enhanced carbapenemase activity. Protein Sci 25:2152-2163
Saral, Aysegul; Leonard, David A; Duzgun, Azer Ozad et al. (2016) Kinetic characterization of GES-22 ?-lactamase harboring the M169L clinical mutation. J Antibiot (Tokyo) 69:858-862
Schroder, Emma C; Klamer, Zachary L; Saral, Aysegul et al. (2016) Clinical Variants of the Native Class D ?-Lactamase of Acinetobacter baumannii Pose an Emerging Threat through Increased Hydrolytic Activity against Carbapenems. Antimicrob Agents Chemother 60:6155-64
Mitchell, Joshua M; Clasman, Jozlyn R; June, Cynthia M et al. (2015) Structural basis of activity against aztreonam and extended spectrum cephalosporins for two carbapenem-hydrolyzing class D ?-lactamases from Acinetobacter baumannii. Biochemistry 54:1976-87
June, Cynthia M; Vaughan, Robert M; Ulberg, Lucas S et al. (2014) A fluorescent carbapenem for structure function studies of penicillin-binding proteins, ?-lactamases, and ?-lactam sensors. Anal Biochem 463:70-4
Kaitany, Kip-Chumba J; Klinger, Neil V; June, Cynthia M et al. (2013) Structures of the class D Carbapenemases OXA-23 and OXA-146: mechanistic basis of activity against carbapenems, extended-spectrum cephalosporins, and aztreonam. Antimicrob Agents Chemother 57:4848-55
Leonard, David A; Bonomo, Robert A; Powers, Rachel A (2013) Class D ?-lactamases: a reappraisal after five decades. Acc Chem Res 46:2407-15
Buchman, Jennifer S; Schneider, Kyle D; Lloyd, Aaron R et al. (2012) Site-saturation mutagenesis of position V117 in OXA-1 ýý-lactamase: effect of side chain polarity on enzyme carboxylation and substrate turnover. Biochemistry 51:3143-50
Schneider, Kyle D; Ortega, Caleb J; Renck, Nicholas A et al. (2011) Structures of the class D carbapenemase OXA-24 from Acinetobacter baumannii in complex with doripenem. J Mol Biol 406:583-94

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