Rapid and sensitive detection of biological pathogens in the environment is an essential capability in many areas, including basic research, health care, environmental monitoring, and homeland defense. This detection is often done through molecular diagnostics, but current technology limits the capability of identifying the appropriate agents present in a sample in a fast and sensitive manner. The Stanford Genome technology Center has developed and performed preliminary experiments with a new method for detecting and identifying nucleic acid based targets at extremely low concentrations. This method, Charge-Perturbation Signature (CPS), is a highly sensitive, specific and rapid method for detecting the presence of a specific sequence of DNA. Sensitivity is in the low femtomol range, which suggests no need for PCR amplification. In this project, Stanford will further develop and improve CPS and demonstrate its application to pathogen DNA detection in a proof-of-principle experiment.

Agency
National Institute of Health (NIH)
Institute
National Institute of Allergy and Infectious Diseases (NIAID)
Type
Exploratory/Developmental Grants (R21)
Project #
5R21AI059499-02
Application #
6901070
Study Section
Special Emphasis Panel (ZRG1-SSS-Q (10))
Program Officer
Breen, Joseph J
Project Start
2004-06-15
Project End
2006-05-31
Budget Start
2005-06-01
Budget End
2006-05-31
Support Year
2
Fiscal Year
2005
Total Cost
$316,909
Indirect Cost
Name
Stanford University
Department
Biochemistry
Type
Schools of Medicine
DUNS #
009214214
City
Stanford
State
CA
Country
United States
Zip Code
94305
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Gharizadeh, Baback; Herman, Zelek S; Eason, Robert G et al. (2006) Large-scale pyrosequencing of synthetic DNA: a comparison with results from Sanger dideoxy sequencing. Electrophoresis 27:3042-7