During embryonic development, neurons must project their axons along specific paths to make precise connections with their synaptic targets. A key challenge is to identify the involved factors and to understand their signaling mechanisms. The navigation of axonal tips (""""""""growth cones""""""""), both in vitro and in vivo, is guided by insoluble factors in the surrounding extracellular matrix (ECM) or cells and by concentration gradients of diffusing factors. Several families of guidance molecules have been identified and purified, such as netrins, semaphorins, ephrins and Slit proteins. The elucidation of pathfinding decisions in vivo is complicated by the simultaneous presence of different guidance factors in a dynamic environment. Recent studies suggest that the combined effects of these signals are often not obvious. For example, the growth cone attraction to netrin-1 can be converted to repulsion by laminin-1, a contact-attractant. The attractive effects of netrin-1 can also be silenced by the interaction between the cytoplasmic domains of netrin-1 receptor and Slit2 receptor while Slit2 alone did not induce a direct response. In addition, the interaction of netrin-1 and Slit2 pathways is developmentally regulated: older neurons become repelled by Slit2 or by a combination of netrin-1 and Slit2 but show no response to netrin-1 alone. Due to experimental complexity, most studies have only been able to investigate one or two signaling molecules at a time. A traditional in vitro assay records the growth cone responses to gradients of soluble factors delivered by a micro-positioned pipette. This assay provides a means to study single cells, but it generates gradients that are imprecise and evolve in time, and it yields results at very low throughput (-1 cell/hour). Here we propose to build a microfluidic device that will allow us to study multiple axon guidance factors simultaneously on cultured neurons. We will: a) design a combinatorial diffusive mixer that will generate multiple combinations of gradients of different axon guidance molecules, b) record the responses of neurons to each combination using time-lapse imaging, and c) employ automated analysis tools to process large amounts of images. The microfluidic device will allow us to: 1) generate stable concentration gradients, 2) precisely control spatiotemporal changes of the gradients, and 3) simultaneously study many different combinations of gradients at high throughput. Consequently this study will probe axon guidance factor interactions of unprecedented complexity and will significantly further our understanding of neural development. It may also shed light on new clinical therapies for certain neurological disorders and for nerve regeneration after injury.

Agency
National Institute of Health (NIH)
Institute
National Institute of Biomedical Imaging and Bioengineering (NIBIB)
Type
Exploratory/Developmental Grants Phase II (R33)
Project #
5R33EB003307-04
Application #
7107896
Study Section
Special Emphasis Panel (ZRR1-BT-1 (01))
Program Officer
Korte, Brenda
Project Start
2003-08-01
Project End
2008-07-31
Budget Start
2006-08-01
Budget End
2007-07-31
Support Year
4
Fiscal Year
2006
Total Cost
$204,446
Indirect Cost
Name
University of Washington
Department
Biomedical Engineering
Type
Schools of Engineering
DUNS #
605799469
City
Seattle
State
WA
Country
United States
Zip Code
98195
Keenan, Thomas M; Frevert, Charles W; Wu, Aileen et al. (2010) A new method for studying gradient-induced neutrophil desensitization based on an open microfluidic chamber. Lab Chip 10:116-22
Cate, David M; Sip, Christopher G; Folch, Albert (2010) A microfluidic platform for generation of sharp gradients in open-access culture. Biomicrofluidics 4:44105
Cooksey, Gregory A; Sip, Christopher G; Folch, Albert (2009) A multi-purpose microfluidic perfusion system with combinatorial choice of inputs, mixtures, gradient patterns, and flow rates. Lab Chip 9:417-26
Sidorova, Julia M; Li, Nianzhen; Schwartz, David C et al. (2009) Microfluidic-assisted analysis of replicating DNA molecules. Nat Protoc 4:849-61