The project, Medical Advice from Glaucoma Informatics (MAGI), seeks to improve glaucoma diagnosis and management with state-of-the-art machine learning classifiers. These classifiers will automate the interpretation of standard automated perimetry (SAP), newer visual field tests, and structural tests for glaucoma in the general population and in stratified glaucoma populations. Phase 1 will complete the feasibility testing already underway. Phase 2 will apply the refined methods to a wider set of glaucoma testing problems.The management of glaucoma depends on a series of classifications. The glaucoma provider classifies tests as normal or indicative of glaucoma. The clinician then determines whether an eye has glaucoma or has had progression. Assembling these classifications, the provider makes decisions about management. Automated test interpreters, either as part of the testing machine or as a computer-based resource, can aid glaucoma providers with real-time interpretations. The research we propose takes advantage of our extensive data sets and builds on the ongoing research in our laboratories.Statistical classifiers, Bayesian nets, machine learning classifiers, and expert systems represent different types of classifiers with diverse properties. Machine learning classifiers can perform exceptionally well at identifying classes, even when the data are complex and have dependencies. We will test and select the optimal machine learning classifier for diagnosis. We will further improve classifier performance and determine feature utility by optimizing the feature set visual field tests are time consuming and stressful. We will streamline the tests by removing unimportant test points.Even with decades of experience, there is uncertainty with regard to the evaluation of the SAP. There is less accumulated knowledge about non-standard tests, such as short-wavelength automated perimetry, nerve fiber layer thickness, or optic nerve head topography. Machine classifiers may learn how to interpret nonstandard tests better. We will go beyond STATPAC's capabilities with classifiers that have learned to interpret SAP, nonstandard visual field tests, structural glaucoma tests, and STATPAC plots in the general population and in patients stratified by race, family history, and other information available at the time of the test.Conversion of suspects to glaucoma and progression of glaucoma cannot yet be predicted from tests. We will develop classifiers for these predictions. Classifiers will be designed to diagnose early glaucoma, detect early progression, and identify glaucomatous eyes at risk of progression.Unsupervised learning provides cluster analysis that can determine distinct groups with members in some way similar from the test data. In an effort to discover new and use useful information with unsupervised learning, we will mine our data in visual function and structural tests for glaucoma and in specific combinations of population groups.

Agency
National Institute of Health (NIH)
Institute
National Eye Institute (NEI)
Type
Exploratory/Developmental Grants Phase II (R33)
Project #
5R33EY013928-03
Application #
6830123
Study Section
Special Emphasis Panel (ZRG1-MDCN-1 (06))
Program Officer
Liberman, Ellen S
Project Start
2002-09-30
Project End
2006-09-29
Budget Start
2004-09-30
Budget End
2005-09-29
Support Year
3
Fiscal Year
2004
Total Cost
$589,323
Indirect Cost
Name
University of California San Diego
Department
Ophthalmology
Type
Schools of Medicine
DUNS #
804355790
City
La Jolla
State
CA
Country
United States
Zip Code
92093
Goldbaum, Michael H; Lee, Intae; Jang, Giljin et al. (2012) Progression of patterns (POP): a machine classifier algorithm to identify glaucoma progression in visual fields. Invest Ophthalmol Vis Sci 53:6557-67
Goldbaum, Michael H; Kozak, Igor; Hao, Jiucang et al. (2011) Pattern recognition can detect subtle field defects in eyes of HIV individuals without retinitis under HAART. Graefes Arch Clin Exp Ophthalmol 249:491-8
Racette, Lyne; Chiou, Christine Y; Hao, Jiucang et al. (2010) Combining functional and structural tests improves the diagnostic accuracy of relevance vector machine classifiers. J Glaucoma 19:167-75
Goldbaum, Michael H; Jang, Gil-Jin; Bowd, Chris et al. (2009) Patterns of glaucomatous visual field loss in sita fields automatically identified using independent component analysis. Trans Am Ophthalmol Soc 107:136-44
Sample, Pamela A; Boden, Catherine; Zhang, Zuohua et al. (2005) Unsupervised machine learning with independent component analysis to identify areas of progression in glaucomatous visual fields. Invest Ophthalmol Vis Sci 46:3684-92
Goldbaum, Michael H; Sample, Pamela A; Zhang, Zuohua et al. (2005) Using unsupervised learning with independent component analysis to identify patterns of glaucomatous visual field defects. Invest Ophthalmol Vis Sci 46:3676-83