Theobjectiveofmylaboratoryistocharacterizehowmolecularcommunicationbetweenbacteriaandtheir animalhostsleadstospecificandreproduciblecolonization.Toaccomplishthisgoal,thelaboratorystudiesthe V.fischeri-squidsystem.Thissystemisadvantageousbecausebacteriacolonizethroughthenaturalrouteof infection,allanimalsarecolonizedwithinthreehoursofbacterialinoculationintotheseawater,thebacteria canbesubjecttodetailedgeneticmanipulation,andtheprecisesiteofinfectioncanbeimageddirectlyinthe liveanimalhost,allowingforcuttingedgegeneticandgenomicapproaches.Focusingonhowsquidare reproduciblycolonizedbythespecificsymbiont,totheexclusionofthemillionsofcompetingbacteriain seawater,hasrevealedkeyrolesforbacterialaggregationandbiofilmformationinpromotingspecifichost- microbeinteractions.Recentlyourglobalgeneticscreentoidentifycolonizationfactorsrevealedmultiplenovel biofilmactivatorsandidentifiedanorphanhistidinekinase,whichactsasanegativeregulatorofSypbiofilm developmentinvivo.Toelucidatethepathwaysgoverningcolonizationandbiofilmdevelopmentintheanimal hostwewill(1)dissectthemoleculardetailsofthenovelhistidinekinasepathway,(2)defineathightemporal andspatialresolutionthestepsnecessaryfortheestablishmentofthismutualisticrelationship,and(3) characterizetheroleofnewcolonizationfactorsusinggeneticandmetabolomicapproaches.Sincethe strategiesusedbyV.fischeritointeractwithitshostareconservedinotherhost-microbesystems,ourfindings willbeapplicabletounderstandotherbeneficialassociationsaswellasinteractionsbetweenpathogenic bacteriaandtheirhosts.
Bacteriathatcolonizeanimalstransitionfromanenvironmentallifestyletothehost-associatedstate,inwhich individualbacterialcellscoordinatefunctionstoactasagroup.Usingamodelsystemthatallowsfor interrogationofbacteriadirectlywithintheanimalhost,thisprojectaddresseshowmolecularsignalingfromthe hostdirectsthebacteriatoformbiofilms,matrix-encodedgroupsofcellsthatarewidespreadandoften underlieantimicrobialresistance.Informationinthemodelwillthenbeusedtoimprovebeneficialbacterial colonization(e.g.probiotics)andinterferewithcolonizationbypathogens.
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