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Gao, Shujuan; Honey, Sangeet; Futcher, Bruce et al. (2016) The non-homologous end-joining pathway of S. cerevisiae works effectively in G1-phase cells, and religates cognate ends correctly and non-randomly. DNA Repair (Amst) 42:1-10
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Kuznetsov, Nikita A; Bergonzo, Christina; Campbell, Arthur J et al. (2015) Active destabilization of base pairs by a DNA glycosylase wedge initiates damage recognition. Nucleic Acids Res 43:272-81
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Mechetin, Grigory V; Zharkov, Dmitry O (2011) Mechanism of translocation of uracil-DNA glycosylase from Escherichia coli between distributed lesions. Biochem Biophys Res Commun 414:425-30
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Song, Kun; Campbell, Arthur J; Bergonzo, Christina et al. (2009) An Improved Reaction Coordinate for Nucleic Acid Base Flipping Studies. J Chem Theory Comput 5:3105-13
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Song, Kun; Hornak, Viktor; de los Santos, Carlos et al. (2008) Molecular mechanics parameters for the FapydG DNA lesion. J Comput Chem 29:17-23
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Song, Kun; Kelso, Catherine; de los Santos, Carlos et al. (2007) Molecular simulations reveal a common binding mode for glycosylase binding of oxidatively damaged DNA lesions. J Am Chem Soc 129:14536-7
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