Problems 1 to 4 bear upon peroxidase, catalase and cytochrome P-450 chemistries which relate directly to problems in toxicology and oncology. 1. Synthesized water soluble (non mu-oxo dimer forming) metal (III) porphyrins will be used in determining the mechanism of the formation of metallo-oxo porphyrins will be used in determining the mechanism of the formation of metallo-oxo porphyrins at the compound I level of oxidation. RCO3H and ROOH species will be used as oxygen transfer agents and the mechanism of the rate limiting step (12-vs.2e-) and the mechanism of the overall reaction (homolytic vs. heterolytic 0-0 bond cleavage) will be determined. Influence of general and specific catalysis, and added ligands upon the rate constants for oxygen transfer will be studied. 2. A major effort will be mounted to synthesize iron (III) porphyrins possessing a """"""""straped on"""""""" thiolate ligand to assess the role of the cysteine thiolate ligand of the cytochrome P-450 enzymes in determining the structure and reactivity of the putative compound I species. 3. Both chemical and electrochemical kinetic techniques are to be used in the determination of the second order rate constant for reaction of compound I species with organic substrates. 4. Recently discovered complex redox reactions of manganese(III) porphyrins in the presence of strongly basic oxyanions will be investigated in detail. Studies 5 to 7 deal with flavins and pteridines. 5. A search for the mechanistic reasons as to why dihydroflavins reduce H2O2 very slowly while the reaction with tetrahydropterins occurs in miliseconds. 6. Explore the reaction of thiol esters with flavins to determine the role of covalent intermediates in the formation of alpha,beta-unsaturation. 7. Search for pathways in the reaction of dihydroflavins with O2 which provide covalent adducts other than the 4a-hydroperoxide. Problems 8 to 10 are in the area of Methoxatin chemistry, 8. The positions of cu (II) ligation will be determined. 9. Analogs will be synthesized to determine the infuence of change in electrochemical potential on cofactor activity with a reconstitutable apoenzyme. 10. Influence of structure of PQQ compounds on the mechanism of amine oxidation will be studied. A problem cental to the mechanism of flavin, porphyrin, dihydropyrine and metallo porphyrin reactions is the putative role of radical intermediates. 11. The super-radical trap substituent 2t,3t-diphenyl-cyclopropyl will be incorporated into suitable molecules to assess the intermediacy of radical intermediates in model and enzymatic reactions. Studies (12) of the role of carbinolamine vs. imines intermediates in enolization reactions will be continued.

Agency
National Institute of Health (NIH)
Institute
National Institute of Diabetes and Digestive and Kidney Diseases (NIDDK)
Type
Method to Extend Research in Time (MERIT) Award (R37)
Project #
5R37DK009171-37
Application #
6176337
Study Section
Physical Biochemistry Study Section (PB)
Program Officer
Laughlin, Maren R
Project Start
1974-09-01
Project End
2002-08-31
Budget Start
2000-09-01
Budget End
2001-08-31
Support Year
37
Fiscal Year
2000
Total Cost
$407,470
Indirect Cost
Name
University of California Santa Barbara
Department
Chemistry
Type
Schools of Arts and Sciences
DUNS #
City
Santa Barbara
State
CA
Country
United States
Zip Code
93106
Zhang, Xiaodong; Bruice, Thomas C (2008) Mechanism of product specificity of AdoMet methylation catalyzed by lysine methyltransferases: transcriptional factor p53 methylation by histone lysine methyltransferase SET7/9. Biochemistry 47:2743-8
Park, Myunji; Canzio, Daniele; Bruice, Thomas C (2008) Incorporation of positively charged ribonucleic guanidine linkages into oligodeoxyribonucleotides: Development of potent antisense agents. Bioorg Med Chem Lett 18:2377-84
Zhang, Xiaodong; Bruice, Thomas C (2007) Histone lysine methyltransferase SET7/9: formation of a water channel precedes each methyl transfer. Biochemistry 46:14838-44
Zhang, Xiaodong; Reddy, Swarnalatha Y; Bruice, Thomas C (2007) Mechanism of methanol oxidation by quinoprotein methanol dehydrogenase. Proc Natl Acad Sci U S A 104:745-9
Zhang, Xiaodong; Bruice, Thomas C (2007) Catalytic mechanism and product specificity of rubisco large subunit methyltransferase: QM/MM and MD investigations. Biochemistry 46:5505-14
Luo, Jia; Bruice, Thomas C (2007) Low-frequency normal modes in horse liver alcohol dehydrogenase and motions of residues involved in the enzymatic reaction. Biophys Chem 126:80-5
Toporowski, Joseph W; Reddy, Swarnalatha Y; Bruice, Thomas C (2007) An investigation of the ionic and solvation patterns of dsDNG versus dsDNA by use of molecular dynamics simulations. Biophys Chem 126:132-9
Zhang, Xiaodong; Bruice, Thomas C (2007) A quantum mechanics/molecular mechanics study of the catalytic mechanism and product specificity of viral histone lysine methyltransferase. Biochemistry 46:9743-51
Zhang, Xiaodong; Bruice, Thomas C (2006) The mechanism of M.HhaI DNA C5 cytosine methyltransferase enzyme: a quantum mechanics/molecular mechanics approach. Proc Natl Acad Sci U S A 103:6148-53
Correa, Bryan J; Canzio, Daniele; Kahane, Alexandra L et al. (2006) DNA sequence recognition by Hoechst 33258 conjugates of hairpin pyrrole/imidazole polyamides. Bioorg Med Chem Lett 16:3745-50

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