The development of nucleoside analogues with novel mechanisms of action capable of overcoming HIV resistance is the main focus of this project. Current emphasis include two main classes of structures: 1) 4'-Ethynyl-2',3'-dideoxynucleosides. While the first target made, (+/-)-1-(2',3'-dideoxy-4-C-ethynyl-ribopentofuranosyl)cytosine, was inactive in cell culture, the 5'-triphosphate was a potent inhibitor of HIV reverse transcriptase (RT) in vitro. Lipase-catalyzed resolution revealed that the D-enantiomer with the natural configuration was the more potent compound. The less potent L-enantiomer lost all activity against the M184V mutant while the D-enantiomer retained activity. The ability of HIV RT to discriminate between 5'-triphosphate enantiomeric substrates is seen only in very few instances. The chiral synthesis of the active (2R,5R)-6-Amino-3-[5-ethynyl-5-(hydroxymethyl)oxolan-2-yl]-3-hydropyrimidin-2-one enantiomer is nearly completed and plans to explore other nucleobases, particularly purines, are underway with the aim of synthesizing pro-drugs suitable to by-pass the first kinase activation. 2) 2',3'-Dideoxybicyclo[3.1.0]hexene nucleosides. In this family of conformationally locked analogues we have identified N-MCD4T as a very effective anti-HIV agent. The corresponding guanosine analogue, structurally similar to carbovir, was inactive. Similarly, the isomeric S-MCD4T was also inactive. Current synthetic studies are directed to the understanding of the differences between these North (N) and South (S) families at the molecular level.

Agency
National Institute of Health (NIH)
Institute
Division of Basic Sciences - NCI (NCI)
Type
Intramural Research (Z01)
Project #
1Z01BC006173-18
Application #
6950176
Study Section
(LMC)
Project Start
Project End
Budget Start
Budget End
Support Year
18
Fiscal Year
2003
Total Cost
Indirect Cost
Name
Basic Sciences
Department
Type
DUNS #
City
State
Country
United States
Zip Code
Russ, Pamela L; Gonzalez-Moa, Maria J; Vu, B Christie et al. (2009) North- and south-bicyclo[3.1.0]hexene nucleosides: the effect of ring planarity on anti-HIV activity. ChemMedChem 4:1354-63
Marquez, Victor E; Sun, Guangyu; Siddiqui, Maqbool A et al. (2008) What are the consequences of freezing the anomeric effect in nucleosides? Nucleic Acids Symp Ser (Oxf) :543-4
Siddiqui, Maqbool A; Marquez, Victor E (2007) The triphosphate of beta-D-4'-C-ethynyl-2',3'-dideoxycytidine is the preferred enantiomer substrate for HIV reverse transcriptase. Bioorg Med Chem 15:283-7
Boyer, Paul L; Julias, John G; Marquez, Victor E et al. (2005) Fixed conformation nucleoside analogs effectively inhibit excision-proficient HIV-1 reverse transcriptases. J Mol Biol 345:441-50
Siddiqui, Maqbool A; Hughes, Stephen H; Boyer, Paul L et al. (2004) A 4'-C-ethynyl-2',3'-dideoxynucleoside analogue highlights the role of the 3'-OH in anti-HIV active 4'-C-ethynyl-2'-deoxy nucleosides. J Med Chem 47:5041-8
Choi, Yongseok; Sun, Guangyu; George, Clifford et al. (2003) Synthesis and conformational analysis of a locked analogue of carbovir built on a bicyclo[3.1.0]hex-2-enyl template. Nucleosides Nucleotides Nucleic Acids 22:2077-91
Choi, Yongseok; George, Clifford; Comin, Maria J et al. (2003) A conformationally locked analogue of the anti-HIV agent stavudine. An important correlation between pseudorotation and maximum amplitude. J Med Chem 46:3292-9