A major energy conversion process in living organisms involves coupling the burning of reduced fuels by respiratory chains to the synthesis of ATP by F1F0 ATP synthases. The enzymes that catalyze these reactions are found embedded in the membranes of mitochondria, chloroplasts, and bacteria, and a transmembrane electrochemical proton gradient appears to function as a required intermediate. The F0 sector of the synthase is composed of membrane spanning subunits (a B2 c12 in E. coli) which conduct protons across the membrane, whereas the F1 sector (alpha3 beta3 gamma delta epsilon) is an extrinsic complex that contains the catalytic sites for ATP synthesis. It has been proposed that proton transport is coupled to ATP synthesis by the rotation of a complex of subunits (gamma epsilon c12) that extends through F0F1. Characterizing this subunit rotation and elucidating other aspects of the mechanism of the synthase are the goals of this proposal. The existence of subunit rotation in F1 is well established but the details of rotational coupling are not well defined. In the proposed studies, a spectral assay will be developed to monitor subunit rotation in fully-active, soluble F1. The approach involves positioning a single fluorescent reporter group on the gamma subunit and a quencher on two of the three catalytic subunits (beta) such that rotation of gamma relative to beta will bring the fluorescent group close to the quenchers to cause transient quenching. This assay will be used to test the kinetic competency of subunit rotation as a required step in ATP synthesis that is coupled to subunit rotation. In contract to F1, subunit rotation in F0 has not been demonstrated. For this purpose, an intersubunit disulfide crosslinking approach will be developed which involves substituting a cys on a c subunit in the c12 oligomer. The test for subunit rotation will be to determine whether the c subunit which is initially in the proper orientation to form a crosslink to subunit a is the same one that occupies that position after catalytic turnover, or whether subunit rotation has moved a different c subunit into that position.

Agency
National Institute of Health (NIH)
Institute
National Institute of General Medical Sciences (NIGMS)
Type
Method to Extend Research in Time (MERIT) Award (R37)
Project #
2R37GM023152-21
Application #
2696508
Study Section
Physical Biochemistry Study Section (PB)
Project Start
1976-05-01
Project End
2003-06-30
Budget Start
1998-07-01
Budget End
1999-06-30
Support Year
21
Fiscal Year
1998
Total Cost
Indirect Cost
Name
Upstate Medical University
Department
Biochemistry
Type
Schools of Medicine
DUNS #
058889106
City
Syracuse
State
NY
Country
United States
Zip Code
13210
Bulygin, Vladimir V; Milgrom, Yakov M (2007) Studies of nucleotide binding to the catalytic sites of Escherichia coli betaY331W-F1-ATPase using fluorescence quenching. Proc Natl Acad Sci U S A 104:4327-31
Milgrom, Yakov M; Cross, Richard L (2005) Rapid hydrolysis of ATP by mitochondrial F1-ATPase correlates with the filling of the second of three catalytic sites. Proc Natl Acad Sci U S A 102:13831-6
Bulygin, Vladimir V; Duncan, Thomas M; Cross, Richard L (2004) Rotor/Stator interactions of the epsilon subunit in Escherichia coli ATP synthase and implications for enzyme regulation. J Biol Chem 279:35616-21
Cross, Richard L; Muller, Volker (2004) The evolution of A-, F-, and V-type ATP synthases and ATPases: reversals in function and changes in the H+/ATP coupling ratio. FEBS Lett 576:1-4
Hutcheon, M L; Duncan, T M; Ngai, H et al. (2001) Energy-driven subunit rotation at the interface between subunit a and the c oligomer in the F(O) sector of Escherichia coli ATP synthase. Proc Natl Acad Sci U S A 98:8519-24
Cross, R L (2000) The rotary binding change mechanism of ATP synthases. Biochim Biophys Acta 1458:270-5
Milgrom, Y M; Murataliev, M B; Boyer, P D (1998) Bi-site activation occurs with the native and nucleotide-depleted mitochondrial F1-ATPase. Biochem J 330 ( Pt 2):1037-43
Bulygin, V V; Duncan, T M; Cross, R L (1998) Rotation of the epsilon subunit during catalysis by Escherichia coli FOF1-ATP synthase. J Biol Chem 273:31765-9
Milgrom, Y M; Cross, R L (1997) Nucleotide-depleted beef heart F1-ATPase exhibits strong positive catalytic cooperativity. J Biol Chem 272:32211-4
Zhou, Y; Duncan, T M; Cross, R L (1997) Subunit rotation in Escherichia coli FoF1-ATP synthase during oxidative phosphorylation. Proc Natl Acad Sci U S A 94:10583-7

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