A variety of nuclear magnetic resonance methods will be employed to investigate a series of selected heme proteins for the purpose of understanding the mechanisms of control of function for hemoglobins. This program will emphasize, but is not restricted to, the exploration and development of the information content of hyperfine shifts in paramagnetic forms of hemoproteins in terms of the detailed molecular/electronic structure in the heme cavity. The ultimate goal is to be able to determine from NMR data the structural consequences of single-point mutations which result in impaired function in Hb A. The cornerstone of our program is the continued unique utilization of selectively isotope-labeled hemes to locate and assign 1H, 2H and 13C heme resonances and the development of indirect NMR methodology for definitively assigning potentially functionally relevant amino acid side chains in the heme cavity. The systems to be studied are selected on the basis of data available to facilitate interpretation of NMR spectral parameters in terms of the difference in structure that can be correlated with difference in function. Central to our study are a series of myoglobins and allosteric monomeric (Chironomus) and dimeric (Chironomus, E. inequivalvis) hemoglobins which serve as simplified models for Hb A. The assigned peaks will be used to quantitatively describe the hyperfine shift origins in terms of detailed structure in low-spin ferric proteins, to develop empirical correlations with structure of the heme cavity in deoxy myoglobins and hemoglobins, and to develop a variety of general NMR probes for structure-function relationships in hemoproteins. The information content and scope of applicability of NMR detection of myoglobin in intact muscle will be explored. The phenomenon of equilibrium heme orientational disorder and the factors influencing protein-heme peripheral contacts will be elucidated in both native and reconstituted hemoproteins, with emphasis on the influence of heme orientation on intra-subunit interactions in dimeric and tetrameric hemoglobins. The oxygen affinity of individual disorder components will be determined. The mechanism of reaction of apo-proteins with hemes and the role of heme orientationally disordered intermediates in hemoprotein reconstitution and biosynthesis will be characterized in a variety of myoglobins and hemoglobins. The structural probes developed for the model myoglobins will be applied towards elucidating the molecular mechanism of allostery in monomeric, dimeric and tetrameric hemoglobins.

Agency
National Institute of Health (NIH)
Institute
National Heart, Lung, and Blood Institute (NHLBI)
Type
Method to Extend Research in Time (MERIT) Award (R37)
Project #
5R37HL016087-24
Application #
2027963
Study Section
Special Emphasis Panel (NSS)
Project Start
1976-12-01
Project End
1999-11-30
Budget Start
1996-12-01
Budget End
1997-11-30
Support Year
24
Fiscal Year
1997
Total Cost
Indirect Cost
Name
University of California Davis
Department
Chemistry
Type
Schools of Arts and Sciences
DUNS #
094878337
City
Davis
State
CA
Country
United States
Zip Code
95618
Ma, Li-Hua; Liu, Yangzhong; Zhang, Xuhong et al. (2009) 1H NMR study of the effect of variable ligand on heme oxygenase electronic and molecular structure. J Inorg Biochem 103:10-9
La Mar, Gerd N (2007) Application of the paramagnetic dipole field for solution NMR active site structure determination in low-spin, cyanide-inhibited ferric hemoproteins. IUBMB Life 59:513-27
Xia, Zhicheng; Nguyen, Bao D; Brunori, Maurizio et al. (2005) 1H-NMR study of the effect of temperature through reversible unfolding on the heme pocket molecular structure and magnetic properties of aplysia limacina cyano-metmyoglobin. Biophys J 89:4149-58
Bondarenko, Vasyl; Wang, Jingtao; Kalish, Heather et al. (2005) Solution 1H NMR study of the accommodation of the side chain of n-butyl-etiohemin-I incorporated into the active site of cyano-metmyoglobin. J Biol Inorg Chem 10:283-93
Tran, Anh-Tuyet T; Kolczak, Urszula; La Mar, Gerd N (2004) Solution 1H NMR study of the active site molecular structure and magnetic properties of the cyanomet complex of the isolated, tetrameric beta-chain from human adult hemoglobin. Biochim Biophys Acta 1701:75-87
Du, Weihong; Xia, Zhicheng; Dewilde, Sylvia et al. (2003) 1H NMR study of the molecular structure and magnetic properties of the active site for the cyanomet complex of O2-avid hemoglobin from the trematode Paramphistomum epiclitum. Eur J Biochem 270:2707-20
Ma, Dejian; Musto, Raffaella; Smith, Kevin M et al. (2003) Solution NMR characterization of the electronic structure and magnetic properties of high-spin ferrous heme in deoxy myoglobin from Aplysia limacina. J Am Chem Soc 125:8494-504
Tran, Anh-Tuyet T; Kolczak, Urszula; La Mar, Gerd N (2003) Solution 1H NMR study of the active site molecular structure and magnetic properties of the cyanomet complex of the isolated alpha-chain from human hemoglobin A. Biochim Biophys Acta 1650:59-72
Du, Weihong; Syvitski, Ray; Dewilde, Sylvia et al. (2003) Solution 1h NMR characterization of equilibrium heme orientational disorder with functional consequences in mouse neuroglobin. J Am Chem Soc 125:8080-1
Sulc, Filip; Fleischer, Everly; Farmer, Patrick J et al. (2003) 1H NMR structure of the heme pocket of HNO-myoglobin. J Biol Inorg Chem 8:348-52

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