Yu, Chun-Nam John; Joachims, Thorsten; Elber, Ron et al. (2008) Support vector training of protein alignment models. J Comput Biol 15:867-80
|
Ng, Patrick; Keich, Uri (2008) Factoring local sequence composition in motif significance analysis. Genome Inform 21:15-26
|
Keich, Uri; Gao, Hong; Garretson, Jeffrey S et al. (2008) Computational detection of significant variation in binding affinity across two sets of sequences with application to the analysis of replication origins in yeast. BMC Bioinformatics 9:372
|
Meyerguz, Leonid; Kleinberg, Jon; Elber, Ron (2007) The network of sequence flow between protein structures. Proc Natl Acad Sci U S A 104:11627-32
|
West, Anthony M A; Elber, Ron; Shalloway, David (2007) Extending molecular dynamics time scales with milestoning: example of complex kinetics in a solvated peptide. J Chem Phys 126:145104
|
Ng, Patrick; Nagarajan, Niranjan; Jones, Neil et al. (2006) Apples to apples: improving the performance of motif finders and their significance analysis in the Twilight Zone. Bioinformatics 22:e393-401
|