Biology is in the midst of intellectual upheaval. An era dominated by the systematic identification and characterization of parts-genes, proteins, cells-is rapidly yielding to one focused on complex interaction networks, the principles of their design, and their role in the context of organismal fitness and natural selection. The emerging field of Systems Biology breaks with the past not only in the types of questions it asks, but also in the diverse disciplines it draws heavily upon, including mathematics, computer science, engineering, and physics. Here we outline Phase II in the development of a training program in Mathematical, Computational and Systems Biology that was initiated under Phase I of the Howard Hughes Medical Institute/NIBIB """"""""Interfaces"""""""" initiative. The program is a coordinated, interdisciplinary program designed to produce Ph.D.s that are prepared for careers in Systems Biology. Highlights of the program include an extensive didactic curriculum;a focus on critical thinking skills;an emphasis on collaboration and collaborative learning;close mentoring, opportunities to develop career skills;and active student involvement. The 38 program faculty members come from eleven different departments and five schools at the University of California, Irvine, and conduct research on diverse topics within Systems Biology. The program enjoys strong campus support and an administrative and intellectual home within an NIH-supported National Center for Systems Biology at UCI.

Public Health Relevance

Biological and biomedical research are increasingly focused on complex systems. By training the next generation of researchers in an interdisciplinary mode-blending biology with mathematics, computer science, engineering and physics, the proposed program will help future scientists and educators function effectively in this new research environment.

Agency
National Institute of Health (NIH)
Institute
National Institute of Biomedical Imaging and Bioengineering (NIBIB)
Type
Institutional National Research Service Award (T32)
Project #
1T32EB009418-01
Application #
7643606
Study Section
Special Emphasis Panel (ZEB1-OSR-E (J1))
Program Officer
Baird, Richard A
Project Start
2009-04-01
Project End
2014-03-31
Budget Start
2009-04-01
Budget End
2010-03-31
Support Year
1
Fiscal Year
2009
Total Cost
$222,406
Indirect Cost
Name
University of California Irvine
Department
Anatomy/Cell Biology
Type
Schools of Arts and Sciences
DUNS #
046705849
City
Irvine
State
CA
Country
United States
Zip Code
92697
Bergman, Jared P; Bovyn, Matthew J; Doval, Florence F et al. (2018) Cargo navigation across 3D microtubule intersections. Proc Natl Acad Sci U S A 115:537-542
Konstorum, Anna; Lowengrub, John S (2018) Activation of the HGF/c-Met axis in the tumor microenvironment: A multispecies model. J Theor Biol 439:86-99
Yan, Huaming; Konstorum, Anna; Lowengrub, John S (2018) Three-Dimensional Spatiotemporal Modeling of Colon Cancer Organoids Reveals that Multimodal Control of Stem Cell Self-Renewal is a Critical Determinant of Size and Shape in Early Stages of Tumor Growth. Bull Math Biol 80:1404-1433
Lawson, Devon A; Kessenbrock, Kai; Davis, Ryan T et al. (2018) Tumour heterogeneity and metastasis at single-cell resolution. Nat Cell Biol 20:1349-1360
Wyman, Dana; Mortazavi, Ali (2018) TranscriptClean: Variant-aware correction of indels, mismatches, and splice junctions in long-read transcripts. Bioinformatics :
Duong, Vy T; Chen, Zihao; Thapa, Mahendra T et al. (2018) Computational Studies of Intrinsically Disordered Proteins. J Phys Chem B 122:10455-10469
Nguyen, Quy H; Pervolarakis, Nicholas; Blake, Kerrigan et al. (2018) Profiling human breast epithelial cells using single cell RNA sequencing identifies cell diversity. Nat Commun 9:2028
Nguyen, Quy H; Pervolarakis, Nicholas; Nee, Kevin et al. (2018) Experimental Considerations for Single-Cell RNA Sequencing Approaches. Front Cell Dev Biol 6:108
Rackauckas, Christopher; Schilling, Thomas; Nie, Qing (2018) Interdisciplinary Case Study: How Mathematicians and Biologists Found Order in Cellular Noise. iScience 8:267-270
Kent, Alyssa G; Garcia, Catherine A; Martiny, Adam C (2018) Increased biofilm formation due to high-temperature adaptation in marine Roseobacter. Nat Microbiol 3:989-995

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