This program will continue to use the power of molecular biology to develop and test new molecular markers for the early detection of NSCLC. As an interactive project, this study brings together promising new approaches from various investigators to develop new molecular markers garnished form some of the most promising areas of genetic research. Novel markers will continue to be developed by 1) differential chip expression studies 2) discovery of additional methylated gene promoters and development of MSP and QMSP assays and 3) identification of mitochondrial DNA mutations. These approaches have already yielded hundreds of promising markers and a robust pipeline for marker development including markers currently in late stage validation trials in the EDRN. We will now place more emphasis will be place on continued development of newly discovered markers into additional analytical and clinical validation. By continuing to integrate these promising approaches from diverse labs at Hopkins we will continue to develop a comprehensive profile of markers in lung cancer. Bronchoalveolar lavage samples and serum/plasma samples from cases and controls will allow us to test new markers directly in rapid pilot studies. As shown previously, we will extend our work in other tumor types when indicated and will share markers and technologies with other EDRN sites. Unlike the usual approach of marker discovery among individual investigators, this integrated project emphasizes the sharing of subjects, tissues, resources, technical expertise and data analysis strategies. Our integrated efforts offer clinical direction and facilitate the translation of basic discoveries in the lab into the clinical arena by further leveraging the unique resources of the entire EDRN.

Agency
National Institute of Health (NIH)
Institute
National Cancer Institute (NCI)
Type
Research Project--Cooperative Agreements (U01)
Project #
5U01CA084986-09
Application #
7292768
Study Section
Special Emphasis Panel (ZCA1-SRRB-E (O1))
Program Officer
Krueger, Karl E
Project Start
1999-09-30
Project End
2009-07-31
Budget Start
2007-09-01
Budget End
2008-07-31
Support Year
9
Fiscal Year
2007
Total Cost
$1
Indirect Cost
Name
Johns Hopkins University
Department
Otolaryngology
Type
Schools of Medicine
DUNS #
001910777
City
Baltimore
State
MD
Country
United States
Zip Code
21218
Pirini, Francesca; Noazin, Sassan; Jahuira-Arias, Martha H et al. (2017) Early detection of gastric cancer using global, genome-wide and IRF4, ELMO1, CLIP4 and MSC DNA methylation in endoscopic biopsies. Oncotarget 8:38501-38516
Guerrero-Preston, Rafael; White, James Robert; Godoy-Vitorino, Filipa et al. (2017) High-resolution microbiome profiling uncovers Fusobacterium nucleatum, Lactobacillus gasseri/johnsonii, and Lactobacillus vaginalis associated to oral and oropharyngeal cancer in saliva from HPV positive and HPV negative patients treated with surgery and Oncotarget 8:110931-110948
Guerrero-Preston, Rafael; Godoy-Vitorino, Filipa; Jedlicka, Anne et al. (2016) 16S rRNA amplicon sequencing identifies microbiota associated with oral cancer, human papilloma virus infection and surgical treatment. Oncotarget 7:51320-51334
Izumchenko, Evgeny; Chang, Xiaofei; Brait, Mariana et al. (2015) Targeted sequencing reveals clonal genetic changes in the progression of early lung neoplasms and paired circulating DNA. Nat Commun 6:8258
Izumchenko, Evgeny; Sun, Kai; Jones, Sian et al. (2015) Notch1 mutations are drivers of oral tumorigenesis. Cancer Prev Res (Phila) 8:277-286
Bateman, Nicholas W; Jaworski, Elizabeth; Ao, Wei et al. (2015) Elevated AKAP12 in paclitaxel-resistant serous ovarian cancer cells is prognostic and predictive of poor survival in patients. J Proteome Res 14:1900-10
Begum, Shahnaz; Hayashi, Masamichi; Ogawa, Takenori et al. (2015) An integrated genome-wide approach to discover deregulated microRNAs in non-small cell lung cancer: Clinical significance of miR-23b-3p deregulation. Sci Rep 5:13236
Kagohara, Luciane Tsukamoto; Schussel, Juliana L; Subbannayya, Tejaswini et al. (2015) Global and gene-specific DNA methylation pattern discriminates cholecystitis from gallbladder cancer patients in Chile. Future Oncol 11:233-49
Cherny, Nathan I; de Vries, Elisabeth G E; Emanuel, Linda et al. (2014) Words matter: distinguishing ""personalized medicine"" and ""biologically personalized therapeutics"". J Natl Cancer Inst 106:
Izumchenko, Evgeny; Chang, Xiaofei; Michailidi, Christina et al. (2014) The TGF?-miR200-MIG6 pathway orchestrates the EMT-associated kinase switch that induces resistance to EGFR inhibitors. Cancer Res 74:3995-4005

Showing the most recent 10 out of 144 publications