The overall goals of this project, in response to RFA-RM-14-015 titled Facile Methods and Technologies for Synthesis of Biomedically Relevant Carbohydrates (U01) are (I) to pioneer more efficient chemical methods to access a core set of differentially protected carbohydrate building blocks-currently a major bottleneck in the chemical construction of oligosaccharides, (II) to achieve readily reproducible, automated solution-phase synthetic methods to connect these building blocks into glycans and (III) to establish automated purification protocols and analysis methods to ensure purity of final products. Because automated protocols require greater specification of variables than manual procedures, such protocols should aid in the facile adaptation of these methods between automated and manual syntheses to set up standard operating procedures for the synthesis of a set of key glycans implicated in human health and disease. To achieve these objectives, five specific aims will be pursued: 1) to optimize methods to simplify the synthesis of carbohydrate building blocks by a metal-catalyzed derivatization of monosaccharides; 2) to develop synthetic routes using the above methods to rhamnose-based sugar building blocks that will result in automated reproducible methods to synthesize oligorhamnose compounds associated with the lipopolysaccharide core of the human pathogen Pseudomonas aeruginosa; 3) to develop synthetic routes using the above and other methods to galactose, fucose, and glucosamine building blocks that will enable reproducible parallel automated solution-phase methods to synthesize small libraries of human milk oligosaccharides; 4) to develop synthetic routes using the above and other methods to make glucosamine and mannose building blocks that will lead to reproducible parallel automated solution-phase methods to synthesize human protein-associated higher mannose-type N-glycan structures currently unavailable in publicly available microarray collections; and 5) to develop synthetic routes to make additional building blocks to then afford reproducible parallel automated solution-phase methods to synthesize human protein-associated O-glycan structures needed for mass spectrometry standards and related structures that are also currently unavailable in microarray collections.

Public Health Relevance

Limited access to pure and well-characterized carbohydrates impedes the understanding of their biological function and consequently, the exploitation of their therapeutic value. This proposal aims to develop more efficient, readily reproducible, and non-toxic synthetic methods to make carbohydrate building blocks and string them together. These protocols will streamline access to carbohydrate structures found on human proteins, in human milk, and on pathogenic bacterial surfaces.

Agency
National Institute of Health (NIH)
Institute
National Institute of General Medical Sciences (NIGMS)
Type
Research Project--Cooperative Agreements (U01)
Project #
3U01GM116248-04S1
Application #
9970587
Study Section
Special Emphasis Panel (ZRG1)
Program Officer
Marino, Pamela
Project Start
2015-08-01
Project End
2020-06-30
Budget Start
2019-07-01
Budget End
2020-06-30
Support Year
4
Fiscal Year
2019
Total Cost
Indirect Cost
Name
Indiana University Bloomington
Department
Chemistry
Type
Schools of Arts and Sciences
DUNS #
006046700
City
Bloomington
State
IN
Country
United States
Zip Code
47401
Peng, Tianyuan; Wooke, Zachary; Pohl, Nicola L B (2018) Scope and limitations of carbohydrate hydrolysis for de novo glycan sequencing using a hydrogen peroxide/metallopeptide-based glycosidase mimetic. Carbohydr Res 458-459:85-88
Saliba, Regis C; Wooke, Zachary J; Nieves, Gabriel A et al. (2018) Challenges in the Conversion of Manual Processes to Machine-Assisted Syntheses: Activation of Thioglycoside Donors with Aryl(trifluoroethyl)iodonium Triflimide. Org Lett 20:800-803
Peng, Tianyuan; Nagy, Gabe; Trinidad, Jonathan C et al. (2017) A High-Throughput Mass-Spectrometry-Based Assay for Identifying the Biochemical Functions of Putative Glycosidases. Chembiochem 18:2306-2311
Nagy, Gabe; Peng, Tianyuan; Pohl, Nicola L B (2017) Recent Liquid Chromatographic Approaches and Developments for the Separation and Purification of Carbohydrates. Anal Methods 9:3579-3593
Gaunitz, Stefan; Nagy, Gabe; Pohl, Nicola L B et al. (2017) Recent Advances in the Analysis of Complex Glycoproteins. Anal Chem 89:389-413
Nagy, Gabe; Peng, Tianyuan; Kabotso, Daniel E K et al. (2016) Protocol for the purification of protected carbohydrates: toward coupling automated synthesis to alternate-pump recycling high-performance liquid chromatography. Chem Commun (Camb) 52:13253-13256
Saliba, Regis C; Pohl, Nicola Lb (2016) Designing sugar mimetics: non-natural pyranosides as innovative chemical tools. Curr Opin Chem Biol 34:127-134
Bode, Lars; Contractor, Nikhat; Barile, Daniela et al. (2016) Overcoming the limited availability of human milk oligosaccharides: challenges and opportunities for research and application. Nutr Rev 74:635-44