Abstract

Public Health Relevance

The GenomeSpace community resource puts the universe of diverse genomic analysis tools within the reach of all biomedical researchers. Through the integrative analysis of genomic data from diverse sources and types, GenomeSpace users will be able to address a variety of problems at the forefront of biomedical research including patient diagnosis and prognosis, identification of new drug targets, and understanding biological mechanisms.

  Funding Agency

Agency
National Institute of Health (NIH)
Institute
National Human Genome Research Institute (NHGRI)
Type
Biotechnology Resource Cooperative Agreements (U41)
Project #
7U41HG007517-03
Application #
9162781
Study Section
Ethical, Legal, Social Implications Review Committee (GNOM)
Program Officer
Di Francesco, Valentina
Project Start
2014-03-17
Project End
2018-02-28
Budget Start
2015-08-01
Budget End
2016-02-29
Support Year
3
Fiscal Year
2015
Total Cost
$1,415,309
Indirect Cost
$473,750

  Institution

Name
University of California San Diego
Department
Internal Medicine/Medicine
Type
Schools of Medicine
DUNS #
804355790
City
La Jolla
State
CA
Country
United States
Zip Code
92093

  Publications

Qu, Kun; Garamszegi, Sara; Wu, Felix et al. (2016) Integrative genomic analysis by interoperation of bioinformatics tools in GenomeSpace. Nat Methods 13:245-247
Lu, Zhipeng; Zhang, Qiangfeng Cliff; Lee, Byron et al. (2016) RNA Duplex Map in Living Cells Reveals Higher-Order Transcriptome Structure. Cell 165:1267-1279
Demchak, Barry; Hull, Tim; Reich, Michael et al. (2014) Cytoscape: the network visualization tool for GenomeSpace workflows. F1000Res 3:151