Our group has continued studies of chromatin structure and the regulation of eukaryotic gene expression. This year we have made further progress towards understanding the biology of ATP-dependent chromatin remodeling by NURF (Nucleosome Remodeling Factor) in transgenic mice. In addition to NURF role as a regulator of TGF beta-responsive genes, NURF is also involved in the regulation of T-cell development and maturation in the thymus. We are also making significant progress in our understanding of the H2AZ incorporation into transcriptionally active chromatin. By building on earlier observations of the involvement of the SWR1 complex in that process, we were able to discover a novel nuclear chaperone Chz1 and characterized its activity and structure. Among multiple H2A-H2B chaperones, Chz1 displays specificity for H2AZ variant and we were able to demonstrate that it functions as a donor of the H2AZ-H2B dimer to SWR1 complex, which in turn catalyzes dimer's incorporation into chromatin. Analysis of in vitro assembled Chz1-H2AZ-H2B heterotrimers revealed the existence of a conserved motif which is also present in other species, thus suggesting that H2AZ-specific chaperones may be widely conserved. In eukaryotes, the segregation of chromosomes during mitosis is specified by centromere, which directs chromosome attachment, through kinetochore, to the spindle apparatus. Using a combination of biochemical, genetic and molecular cell techniques we demonstrated than yeast Scm3 nonhistone protein is necessary for the incorporation of CenH3 (centromere-specific variant of histone H3)into centromeric nuclosome and that Scm3 actually constitutes stable structural component of yeast centromere. Scm3 depletion causes loss of centromere at both structural and functional level. Moreover, reconstitution of centromerioc nucleosome core in vitro using purified recombinant protins revealed that Scm3 association with CenH3-H4 tetramer leads to the exclusion of H2A-H2B dimers. Therefore, we have proposed a new model for chromatin at yeast centromeres, involving a nonhistone protein at the core of the centromeric nucleosome.

Agency
National Institute of Health (NIH)
Institute
National Cancer Institute (NCI)
Type
Intramural Research (Z01)
Project #
1Z01BC005263-26
Application #
7592517
Study Section
Project Start
Project End
Budget Start
Budget End
Support Year
26
Fiscal Year
2007
Total Cost
$1,498,576
Indirect Cost
Name
National Cancer Institute Division of Basic Sciences
Department
Type
DUNS #
City
State
Country
United States
Zip Code
Kwon, So Yeon; Xiao, Hua; Wu, Carl et al. (2009) Alternative splicing of NURF301 generates distinct NURF chromatin remodeling complexes with altered modified histone binding specificities. PLoS Genet 5:e1000574
Wu, Wei-Hua; Wu, Chwen-Huey; Ladurner, Andreas et al. (2009) N terminus of Swr1 binds to histone H2AZ and provides a platform for subunit assembly in the chromatin remodeling complex. J Biol Chem 284:6200-7
Luk, Ed; Vu, Ngoc-Diep; Patteson, Kem et al. (2007) Chz1, a nuclear chaperone for histone H2AZ. Mol Cell 25:357-68
Mizuguchi, Gaku; Xiao, Hua; Wisniewski, Jan et al. (2007) Nonhistone Scm3 and histones CenH3-H4 assemble the core of centromere-specific nucleosomes. Cell 129:1153-64
Schwanbeck, Ralf; Xiao, Hua; Wu, Carl (2004) Spatial contacts and nucleosome step movements induced by the NURF chromatin remodeling complex. J Biol Chem 279:39933-41
Mizuguchi, Gaku; Shen, Xuetong; Landry, Joe et al. (2004) ATP-driven exchange of histone H2AZ variant catalyzed by SWR1 chromatin remodeling complex. Science 303:343-8
Shen, Xuetong; Xiao, Hua; Ranallo, Ryan et al. (2003) Modulation of ATP-dependent chromatin-remodeling complexes by inositol polyphosphates. Science 299:112-4
Shen, Xuetong; Ranallo, Ryan; Choi, Eugene et al. (2003) Involvement of actin-related proteins in ATP-dependent chromatin remodeling. Mol Cell 12:147-55