Our research focuses on the structural biology of proteins involved in signal transduction (STATs, cytokines, hepatocyte growth factor) and regulation of gene expression (STATs and Nus proteins). We have also collaborated on a novel antiviral entry inhibitory protein, scytovirin. Using three-dimensional (3D) solution structures and dynamics of proteins and complexes, involving protein-protein, protein-nucleic, and protein-carbohydrate interactions, we elucidate the mechanism of action for these systems and investigate ways to modulate the function. In the STAT system of proteins, we have determined the solution structure of the N-terminal domain of STAT4 and found evidence for a new dimerization interface. Corroborating evidence for this interface is being pursued via investigation of the N-terminal domains (NTDs) of all seven STAT family members. A manuscript describing these studies is being revised for publication. The interactions indicated in the NTD studies have also enabled us to examine the heterodimerization of STAT1 and STAT2 NTDs. These studies are key to understanding the variety of modes of combination among the STAT proteins that can explain the involvement of the seven STAT proteins in literally hundreds of signaling/DNA recognition processes. The studies are being supplemented with further structural determinations for other STAT NTDs.

Agency
National Institute of Health (NIH)
Institute
National Cancer Institute (NCI)
Type
Intramural Research (Z01)
Project #
1Z01BC010346-09
Application #
7733013
Study Section
Project Start
Project End
Budget Start
Budget End
Support Year
9
Fiscal Year
2008
Total Cost
$397,588
Indirect Cost
Name
National Cancer Institute Division of Basic Sciences
Department
Type
DUNS #
City
State
Country
United States
Zip Code
Chao, Fa-An; Byrd, R Andrew (2017) Application of geometric approximation to the CPMG experiment: Two- and three-site exchange. J Magn Reson 277:8-14
Chakrabarti, Kalyan S; Li, Jess; Das, Ranabir et al. (2017) Conformational Dynamics and Allostery in E2:E3 Interactions Drive Ubiquitination: gp78 and Ube2g2. Structure 25:794-805.e5
Chao, Fa-An; Byrd, R Andrew (2016) Geometric Approximation: A New Computational Approach To Characterize Protein Dynamics from NMR Adiabatic Relaxation Dispersion Experiments. J Am Chem Soc 138:7337-45
Sun, Shangjin; Gill, Michelle; Li, Yifei et al. (2015) Efficient and generalized processing of multidimensional NUS NMR data: the NESTA algorithm and comparison of regularization terms. J Biomol NMR 62:105-117
Gill, Michelle L; Byrd, R Andrew (2014) Dynamic activation of apoptosis: conformational ensembles of cIAP1 are linked to a spring-loaded mechanism. Nat Struct Mol Biol 21:1022-3
Das, Ranabir; Loss, Sandra; Li, Jess et al. (2008) Structural biophysics of the NusB:NusE antitermination complex. J Mol Biol 376:705-20
McFeeters, Robert L; Xiong, Changyun; O'Keefe, Barry R et al. (2007) The novel fold of scytovirin reveals a new twist for antiviral entry inhibitors. J Mol Biol 369:451-61
Xiong, Changyun; O'Keefe, Barry R; Byrd, R Andrew et al. (2006) Potent anti-HIV activity of scytovirin domain 1 peptide. Peptides 27:1668-75
Hamel, Damon J; Zhou, Hongjun; Starich, Mary R et al. (2006) Chemical-shift-perturbation mapping of the phosphotransfer and catalytic domain interaction in the histidine autokinase CheA from Thermotoga maritima. Biochemistry 45:9509-17
Morcombe, Corey R; Gaponenko, Vadim; Byrd, R Andrew et al. (2004) Diluting abundant spins by isotope edited radio frequency field assisted diffusion. J Am Chem Soc 126:7196-7

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