We study how enhancers activate transcription in the chromatin environment of eukaryotic cells. We used chromatinized, stably replicating episomes in human erythroid K562 cells to study the interaction of globin genes and elements of the beta-globin locus control region (LCR). Mutagenesis studies which systematically eliminated transcription factor binding sites in LCR HS2 and in the embryonic epsilon-globin promoter, revealed that enhancer and promoter mutually affect each others chromatin structure. These data support a direct communication model of enhancer action. Furthermore, an intact TATA box was required for promoter remodeling by the enhancer. When the epsilon-globin gene is transcriptionally activated by HS2, the structure of the TATA proximal nucleosome (N1) is altered. To elucidate the nature of this alteration and the link between chromatin modification and gene expression, we examined nucleoprotein composition and histone acetylation at transcriptionally active and inactive promoters. There was a marked decrease in nucleoprotein complexes recovered from the proximal promoter region of actively transcribing epsilon-globin genes compared to inactive promoters. Furthermore, the N1 nucleosome of active promoters showed dramatic hyperacetylation of histone H3 and H4, while the adjacent upstream nucleosome was not differentially acetylated. This highly directed and specific nucleosome modification that accompanies transactivation by HS2 could not be mimicked by global acetylation of histones in vivo by Trichostatin A, suggesting additional activities of HS2 are necessary for transactivation. Taken together, the data argue that N1 is present but in an altered conformation in at least some of the active promoters. We continue to explore the regulatory role in vivo of chromatin structure in the expression of globin genes, and the mechanism of action of the beta-globin LCR. - globin genes, chromatin structure, transcription, locus control region, nucleosomes, histone acetylation enhancers""""""""

Agency
National Institute of Health (NIH)
Institute
National Institute of Diabetes and Digestive and Kidney Diseases (NIDDK)
Type
Intramural Research (Z01)
Project #
1Z01DK015508-11
Application #
6289719
Study Section
Special Emphasis Panel (LCDB)
Project Start
Project End
Budget Start
Budget End
Support Year
11
Fiscal Year
1999
Total Cost
Indirect Cost
City
State
Country
United States
Zip Code
Lee, Jongjoo; Krivega, Ivan; Dale, Ryan K et al. (2017) The LDB1 Complex Co-opts CTCF for Erythroid Lineage-Specific Long-Range Enhancer Interactions. Cell Rep 19:2490-2502
Krivega, Ivan; Dean, Ann (2016) Chromatin looping as a target for altering erythroid gene expression. Ann N Y Acad Sci 1368:31-9
Deng, Wulan; Rupon, Jeremy W; Krivega, Ivan et al. (2014) Reactivation of developmentally silenced globin genes by forced chromatin looping. Cell 158:849-860
Song, Sang-Hyun; Hou, Chunhui; Dean, Ann (2007) A positive role for NLI/Ldb1 in long-range beta-globin locus control region function. Mol Cell 28:810-22
Zhao, Hui; Kim, Aeri; Song, Sang-Hyun et al. (2006) Enhancer blocking by chicken beta-globin 5'-HS4: role of enhancer strength and insulator nucleosome depletion. J Biol Chem 281:30573-80
Dean, Ann (2006) On a chromosome far, far away: LCRs and gene expression. Trends Genet 22:38-45
Zhao, Hui; Dean, Ann (2005) Organizing the genome: enhancers and insulators. Biochem Cell Biol 83:516-24
Dean, Ann (2004) Chromatin remodelling and the interaction between enhancers and promoters in the beta-globin locus. Brief Funct Genomic Proteomic 2:344-54
Kim, AeRi; Dean, Ann (2004) Developmental stage differences in chromatin subdomains of the beta-globin locus. Proc Natl Acad Sci U S A 101:7028-33
Zhao, Hui; Dean, Ann (2004) An insulator blocks spreading of histone acetylation and interferes with RNA polymerase II transfer between an enhancer and gene. Nucleic Acids Res 32:4903-19

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