of Work: The long-term goal of this project is to understand the fidelity of DNA synthesis by multiprotein DNA replication and repair complexes. This year, progress was made in three areas. We established an in vivo system in yeast cells to determine the fidelity of DNA replication by the leading and lagging strand DNA replication machinery and used the system to demonstrate that yeast origins establish a strand bias for replicational mutagenesis induced by two base analogs, one of which (8-oxo-guanine) is a major DNA lesion generated by oxidative stress. We investigated the roles of translesion synthesis polymerases in yeast upon exposure to simulated sunlight. These studies are more relevant to the true physiological roles of these polymerases in suppressing or perhaps promoting skin cancer than are all previous studies of cytotoxicity and mutagenesis induced by irradiation with 254 nm UV light, because the spectrum of lesions generated by sunlight are significantly different (e.g., much more oxidative stress). This year, we also described an assay to measure the fidelity of BER reconstituted with purified enzymes, and used it to determine the fidelity of a four-protein single-nucleotide BER reaction involving Pol beta. The base substitution fidelity of Pol beta dependent BER was found to be 3 to 8-fold higher than is single nucleotide gap filling by Pol beta alone, suggesting that other proteins in the BER reaction may enhance the base substitution fidelity of Pol beta during single-nucleotide BER

Agency
National Institute of Health (NIH)
Institute
National Institute of Environmental Health Sciences (NIEHS)
Type
Intramural Research (Z01)
Project #
1Z01ES065046-17
Application #
6838446
Study Section
(LMG)
Project Start
Project End
Budget Start
Budget End
Support Year
17
Fiscal Year
2003
Total Cost
Indirect Cost
Name
U.S. National Inst of Environ Hlth Scis
Department
Type
DUNS #
City
State
Country
United States
Zip Code
Kunkel, Thomas A (2004) DNA replication fidelity. J Biol Chem 279:16895-8
McCulloch, Scott D; Kokoska, Robert J; Chilkova, Olga et al. (2004) Enzymatic switching for efficient and accurate translesion DNA replication. Nucleic Acids Res 32:4665-75
Kozmin, Stanislav G; Pavlov, Youri I; Kunkel, Thomas A et al. (2003) Roles of Saccharomyces cerevisiae DNA polymerases Poleta and Polzeta in response to irradiation by simulated sunlight. Nucleic Acids Res 31:4541-52
Matsuda, Toshiro; Vande Berg, Brian J; Bebenek, Katarzyna et al. (2003) The base substitution fidelity of DNA polymerase beta-dependent single nucleotide base excision repair. J Biol Chem 278:25947-51
Pavlov, Youri I; Newlon, Carol S; Kunkel, Thomas A (2002) Yeast origins establish a strand bias for replicational mutagenesis. Mol Cell 10:207-13
Rogozin, Igor B; Kunkel, Thomas A; Pavlov, Youri I (2002) Double-strand breaks in DNA during somatic hypermutation of Ig genes: cause or consequence? Trends Immunol 23:12-3
Pavlov, Youri I; Rogozin, Igor B; Galkin, Alexey P et al. (2002) Correlation of somatic hypermutation specificity and A-T base pair substitution errors by DNA polymerase eta during copying of a mouse immunoglobulin kappa light chain transgene. Proc Natl Acad Sci U S A 99:9954-9
Pavlov, Y I; Nguyen, D; Kunkel, T A (2001) Mutator effects of overproducing DNA polymerase eta (Rad30) and its catalytically inactive variant in yeast. Mutat Res 478:129-39
Pavlov, Y I; Shcherbakova, P V; Kunkel, T A (2001) In vivo consequences of putative active site mutations in yeast DNA polymerases alpha, epsilon, delta, and zeta. Genetics 159:47-64
Jin, Y H; Obert, R; Burgers, P M et al. (2001) The 3'-->5' exonuclease of DNA polymerase delta can substitute for the 5' flap endonuclease Rad27/Fen1 in processing Okazaki fragments and preventing genome instability. Proc Natl Acad Sci U S A 98:5122-7

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