A new time-resolved fluorescence facility was developed to provide rapid collection and analysis of fluorescence data related to macromolecular size, flexibility, folding and fluctuations. The ability to collect multifrequency phase/modulation data (contemporaneously with our state of the art pulse decay system) was added to our facility, as was the capability to observe fluorescence under 3K bar pressures (to examine volume dependence of folding and subunit-subunit affinities of proteins, along with free volume dependence of lipid fluctuations.) The main time-resolved spectrofluorometer was utilized to study the structure and dynamics of many different proteins, including: gramicidin, a """"""""pore-forming"""""""" peptide; tubulin, a cytoskeletal component whose prefilamentous state can be discerned with bound nile red; arginase and OTCase, enzymes whose linked metabolic feedback is mediated by clear conformational changes identified on our equipment; enzyme I of the phosphotransferase system (work in collaboration with M. Han that led to his being awarded the Lamport Award from the Biophysical Society), a protein whose ligand- dependent subunit association and sulfhydryl reactivity are revealed by nanosecond fluorescence spectra. Protein folding continued to grow as a priority topic in our lab. The metal-stabilized structures of arginase, alcohol dehydrogenase, glyceraldehyde phosphate dehydrogenase, and other proteins were perturbed so our rapid-collection instrument could chronicle structural change vs. time. We also continued our inquiry into lipid packing fluctuations, using a unique probe (coronene) that is sensitive to submicrosecond gel fluid equilibration in membranes.

Agency
National Institute of Health (NIH)
Institute
National Heart, Lung, and Blood Institute (NHLBI)
Type
Intramural Research (Z01)
Project #
1Z01HL001452-06
Application #
3920041
Study Section
Project Start
Project End
Budget Start
Budget End
Support Year
6
Fiscal Year
1988
Total Cost
Indirect Cost
Name
U.S. National Heart Lung and Blood Inst
Department
Type
DUNS #
City
State
Country
United States
Zip Code
Michelman-Ribeiro, Ariel; Mazza, Davide; Rosales, Tilman et al. (2009) Direct measurement of association and dissociation rates of DNA binding in live cells by fluorescence correlation spectroscopy. Biophys J 97:337-46
Rosales, Tilman; Xu, Jianhua; Wu, Xiongwu et al. (2008) Molecular dynamics simulations of perylene and tetracene librations: comparison with femtosecond upconversion data. J Phys Chem A 112:5593-7
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Rosales, Tilman; Georget, Virginie; Malide, Daniela et al. (2007) Quantitative detection of the ligand-dependent interaction between the androgen receptor and the co-activator, Tif2, in live cells using two color, two photon fluorescence cross-correlation spectroscopy. Eur Biophys J 36:153-61
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Xu, Jianhua; Toptygin, Dmitri; Graver, Karen J et al. (2006) Ultrafast fluorescence dynamics of tryptophan in the proteins monellin and IIAGlc. J Am Chem Soc 128:1214-21
Blinova, Ksenia; Carroll, Stefanie; Bose, Salil et al. (2005) Distribution of mitochondrial NADH fluorescence lifetimes: steady-state kinetics of matrix NADH interactions. Biochemistry 44:2585-94
He, Liusheng; Bradrick, Thomas D; Karpova, Tatiana S et al. (2003) Flow cytometric measurement of fluorescence (Forster) resonance energy transfer from cyan fluorescent protein to yellow fluorescent protein using single-laser excitation at 458 nm. Cytometry A 53:39-54
Kim, Soon-Jong; Beard, William A; Harvey, John et al. (2003) Rapid segmental and subdomain motions of DNA polymerase beta. J Biol Chem 278:5072-81

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