The ability to locate important phrases in natural language text is useful for the purposes of indexing or placing hyperlinks in text. In either case one seeks to improve access to the textual material. In the past the most common method used for the location of phrases has been a part of speech tagger. We have developed a new approach that uses scoring algorithms to rank phrases as to how useful they may be. A number of different methods have been developed and tested. These are being combined with methods of stemming and of finding inflectional variants of phrases that are synonymous for retrieval purposes. The UMLS system is also being used to find synonymous phrases for indexing. These methods are being applied to find useful phrases in NCBI's electronic textbook project that is currently online but still under development. The methods are also beginning to be applied to the PubMedCentral database of journal articles in biology and medicine and to the indexing of OCR material from the scanning of back issues of journals for this database. Current work is focused on adding a sophisticated abbreviation detection capability to this system.

Agency
National Institute of Health (NIH)
Institute
National Library of Medicine (NLM)
Type
Intramural Research (Z01)
Project #
1Z01LM000090-08
Application #
7316265
Study Section
(CBB)
Project Start
Project End
Budget Start
Budget End
Support Year
8
Fiscal Year
2006
Total Cost
Indirect Cost
Name
National Library of Medicine
Department
Type
DUNS #
City
State
Country
United States
Zip Code
Yu, Hong; Kim, Won; Hatzivassiloglou, Vasileios et al. (2007) Using MEDLINE as a knowledge source for disambiguating abbreviations and acronyms in full-text biomedical journal articles. J Biomed Inform 40:150-9
Wilbur, W John; Kim, Won; Xie, Natalie (2006) SPELLING CORRECTION IN THE PUBMED SEARCH ENGINE. Inf Retr Boston 9:543-564
Wilbur, W John; Rzhetsky, Andrey; Shatkay, Hagit (2006) New directions in biomedical text annotation: definitions, guidelines and corpus construction. BMC Bioinformatics 7:356
Kim, Won; Wilbur, W John (2005) A strategy for assigning new concepts in the MEDLINE database. AMIA Annu Symp Proc :395-9
Smith, L; Rindflesch, T; Wilbur, W J (2004) MedPost: a part-of-speech tagger for bioMedical text. Bioinformatics 20:2320-1
Smith, L; Wilbur, W J (2004) Retrieving definitional content for ontology development. Comput Biol Chem 28:387-91
Yeganova, L; Smith, L; Wilbur, W J (2004) Identification of related gene/protein names based on an HMM of name variations. Comput Biol Chem 28:97-107
Smith, L; Yeganova, L; Wilbur, W J (2003) Hidden Markov models and optimized sequence alignments. Comput Biol Chem 27:77-84
Aronson, A R; Bodenreider, O; Chang, H F et al. (2000) The NLM Indexing Initiative. Proc AMIA Symp :17-21
Kim, W; Wilbur, W J (2000) Corpus-based statistical screening for phrase identification. J Am Med Inform Assoc 7:499-511

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