The scope of this project is the exploratory application of information theory to basic and clinical research on the relationships between sequences of DNA, of RNA, and of the related proteins. It is largely based on the work of Dr. T. Schneider of NCI, et al., on DNA splice site analyses. Collaborative development of processing algorithms for the information content of macromolecular sequences as well as communication of data, processing methods, and results among researchers in diverse fields are involved.? ? Most of the effort on this project this year has involved trying to link our locally accurate and precise measures of splice site position and strength to the more global models used for exon and intron prediction by other groups. Sequences of primary interest are those associated with the ASPM gene. This has proved to be very challenging. However, we feel it is most worthwhile because with our information-theoretic approach, we can find and predict splice site locations to single base pair precision. In fact, we have predicted splitting of sites involving adjacent base pairs from the genomic DNA, whereas many of the other methods cannot specify splicing locations to less than a half-dozen base pairs without placing such precision in look-up tables.? ? A question of very general interest to us is just how much prediction of alternative splicing can be done on the basis of the genomic DNA sequence, and how much is related to local and global environmental factors.
| Goldin, Ehud; Stahl, Stefanie; Cooney, Adele M et al. (2004) Transfer of a mitochondrial DNA fragment to MCOLN1 causes an inherited case of mucolipidosis IV. Hum Mutat 24:460-5 |
