Progress in FY2015 was in the following areas: (1) HIV-1 CAPSID ASSEMBLIES. We have obtained quantitative structural constraints for the dimer interface in tubular CA assemblies, using a variety of solid state NMR techniques (BroBaRR, REDOR, NCCN tensor correlation, etc.) Previous studies by crystallography, cryoEM, and solution NMR have resulted in disparate structural models for this critical region of intermolecular association. From our solid state NMR constraints, we have developed a detailed structural model for the dimer interface in the tubular assemblies. This represents the first demonstration that solid state NMR measurements can provide new atomic-level structural information to complement information from cryoEM and crystallography. A paper describing this work is in preparation. We have also examined the R18L mutant of CA, which forms either spherical assemblies or planar 2D lattices under certain assembly conditions. Comparison with solid state NMR spectra of wild-type CA tubes provides new information about variations in local structure (particularly sidechain conformations) and local dynamics in CA spheres, tubes, and planar assemblies. A paper describing this work is in preparation.

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Support Year
7
Fiscal Year
2015
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Indirect Cost
Name
U.S. National Inst Diabetes/Digst/Kidney
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Gupta, Sebanti; Tycko, Robert (2018) Segmental isotopic labeling of HIV-1 capsid protein assemblies for solid state NMR. J Biomol NMR 70:103-114
Bayro, Marvin J; Ganser-Pornillos, Barbie K; Zadrozny, Kaneil K et al. (2016) Helical Conformation in the CA-SP1 Junction of the Immature HIV-1 Lattice Determined from Solid-State NMR of Virus-like Particles. J Am Chem Soc 138:12029-32
Bayro, Marvin J; Tycko, Robert (2016) Structure of the Dimerization Interface in the Mature HIV-1 Capsid Protein Lattice from Solid State NMR of Tubular Assemblies. J Am Chem Soc 138:8538-46
Lu, Jun-Xia; Bayro, Marvin J; Tycko, Robert (2016) Major Variations in HIV-1 Capsid Assembly Morphologies Involve Minor Variations in Molecular Structures of Structurally Ordered Protein Segments. J Biol Chem 291:13098-112
Bayro, Marvin J; Chen, Bo; Yau, Wai-Ming et al. (2014) Site-specific structural variations accompanying tubular assembly of the HIV-1 capsid protein. J Mol Biol 426:1109-27
Chen, Bo; Tycko, Robert (2011) Simulated self-assembly of the HIV-1 capsid: protein shape and native contacts are sufficient for two-dimensional lattice formation. Biophys J 100:3035-44
Lu, Jun-Xia; Sharpe, Simon; Ghirlando, Rodolfo et al. (2010) Oligomerization state and supramolecular structure of the HIV-1 Vpu protein transmembrane segment in phospholipid bilayers. Protein Sci :
Chen, Bo; Tycko, Robert (2010) Structural and dynamical characterization of tubular HIV-1 capsid protein assemblies by solid state nuclear magnetic resonance and electron microscopy. Protein Sci 19:716-30