Superresolution techniques such as photoactivated localization microscopy (PALM) enable the imaging of fluorescent protein chimeras to reveal the organization of genetically-expressed proteins on the nanoscale with a density of molecules high enough to provide structural context. In PALM, serial photoactivation and subsequent bleaching of numerous sparse subsets of photoactivated fluorescent protein molecules is performed. Individual molecules are then localized at near molecular resolution by determining their centers of fluorescent emission via a statistical fit of their point-spread-function. The aggregate position information from all subsets is then assembled into a super-resolution image, in which individual fluorescent molecules are isolated at high molecular densities (up to 10,000 molecules/micron squared). We have previously demonstrated PALM imaging of intracellular structures (including lysosome, Golgi apparatus and mitochondria) in cryo-prepared thin sections, as well as imaging of vinculin and actin in fixed cells with TIRF excitation, and correlative PALM/transmission electron microscopy of a mitochondrial marker protein. We have developed a dual-label PALM assay system using two different photactivatable molecules expressed within cells. In addition, we have developed a system for doing single particle tracking using PALM in living cells that allows protein diffusion and immobilization to be characterized at the single molecule level. Called single particle tracking PALM (sptPALM), the technique involves activating, localizing and bleaching many subsets of photoactivatated fluorescent protein chimeras in live cells. Spatially-resolved maps of single molecule motions can be obtained by imaging membrane proteins with this technique, providing several orders of magnitude more trajectories per cell than by traditional single particle tracking. By probing distinct subsets of molecules, including Gag and VSVG, we demonstrated that sptPALM can provide a powerful means for exploring the origin of spatial and temporal heterogeneities in membranes. We have helped apply to biological samples a new interferometry superresolution imaging technique that integrates a single-photon multiphase interferometric scheme with PALM. This approach is called interferometric photoactivated localization microscopy (iPALM). Specifically, a single photon derived from a photon emitter like photoactivatable GFP, after traveling different path lengths dependent, is allowed to self-interfere in a 3-way beam splitter. The three output beams from the splitter are then used to determine the axial position of the source molecule, whose x-y position is determined via PALM. iPALM provides a 10-fold improvement in axial resolution and a 100-fold improvement in photon efficiency compared to defocusing techniques. This makes it is particularly suited for accurate 3D localization of PA-FPs. iPALM imaging has resolved the diameter of microtubules to nearly their known dimension of 25-nm along the z-axis. In addition, the dorsal and ventral positions at the leading edge of the plasma membrane (50-nm distance) could be distinguished, and the 3D organization of αv integrin within focal adhesions. The sub-20 nm, 3D spatial resolution capability of iPALM has much potential for quantitative measurements of protein distributions and topologies that underlie the complex, molecular-scale structures found within cells.

Project Start
Project End
Budget Start
Budget End
Support Year
5
Fiscal Year
2011
Total Cost
$889,480
Indirect Cost
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State
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Lippincott-Schwartz, Jennifer (2015) Profile of Eric Betzig, Stefan Hell, and W. E. Moerner, 2014 Nobel Laureates in Chemistry. Proc Natl Acad Sci U S A 112:2630-2
Chen, Bi-Chang; Legant, Wesley R; Wang, Kai et al. (2014) Lattice light-sheet microscopy: imaging molecules to embryos at high spatiotemporal resolution. Science 346:1257998
Shcherbakova, Daria M; Sengupta, Prabuddha; Lippincott-Schwartz, Jennifer et al. (2014) Photocontrollable fluorescent proteins for superresolution imaging. Annu Rev Biophys 43:303-29
Sengupta, Prabuddha; van Engelenburg, Schuyler B; Lippincott-Schwartz, Jennifer (2014) Superresolution imaging of biological systems using photoactivated localization microscopy. Chem Rev 114:3189-202
Lippincott-Schwartz, Jennifer (2014) Foreword. Histochem Cell Biol 142:1-2
Hu, Ying S; Nan, Xiaolin; Sengupta, Prabuddha et al. (2013) Accelerating 3B single-molecule super-resolution microscopy with cloud computing. Nat Methods 10:96-7
Alivisatos, A Paul; Andrews, Anne M; Boyden, Edward S et al. (2013) Nanotools for neuroscience and brain activity mapping. ACS Nano 7:1850-66
Sengupta, Prabuddha; Lippincott-Schwartz, Jennifer (2013) Photohighlighting approaches to access membrane dynamics of the Golgi apparatus. Methods Cell Biol 118:217-34
Millis, Bryan A; Burnette, Dylan T; Lippincott-Schwartz, Jennifer et al. (2013) Superresolution imaging with standard fluorescent probes. Curr Protoc Cell Biol 60:Unit 21.8.
Sengupta, Prabuddha; Jovanovic-Talisman, Tijana; Lippincott-Schwartz, Jennifer (2013) Quantifying spatial organization in point-localization superresolution images using pair correlation analysis. Nat Protoc 8:345-54

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