Abstract

In the past year, we have made progress in our understanding of the mechanism of action of classes of regulatory RNAs that respond to amino acid starvation and to the bacterial cell wall precursor GlcN6P. Work on the T-box, which derives from the paper our laboratory published in 2013 continues with analysis of two important aspects of the function of this genetic regulator: as a molecular ruler, that identifies its ligand (tRNA) based on linear dimensions, and on its ability to recognize a unique feature of tRNA, namely the elbow. Work also continues on analysis and engineering of the function of the glmS ribozyme-riboswitch, which controls cell wall biosynthesis in Gram-positive bacteria, including many pathogens. We also have made advances in methodology for the analysis of biological RNAs.

  Funding Agency

Agency
National Institute of Health (NIH)
Institute
National Heart, Lung, and Blood Institute (NHLBI)
Type
Investigator-Initiated Intramural Research Projects (ZIA)
Project #
1ZIAHL006102-06
Application #
9353136
Study Section
Project Start
Project End
Budget Start
Budget End
Support Year
6
Fiscal Year
2016
Total Cost
Indirect Cost

  Institution

Name
U.S. National Heart Lung and Blood Inst
Department
Type
DUNS #
City
State
Country
Zip Code

  Publications

Chen, Michael C; Tippana, Ramreddy; Demeshkina, Natalia A et al. (2018) Structural basis of G-quadruplex unfolding by the DEAH/RHA helicase DHX36. Nature 558:465-469
Lau, Matthew W L; Trachman 3rd, Robert J; Ferré-D'Amaré, Adrian R (2017) A divalent cation-dependent variant of the glmS ribozyme with stringent Ca(2+) selectivity co-opts a preexisting nonspecific metal ion-binding site. RNA 23:355-364
Miao, Zhichao; Adamiak, Ryszard W; Antczak, Maciej et al. (2017) RNA-Puzzles Round III: 3D RNA structure prediction of five riboswitches and one ribozyme. RNA 23:655-672
Zhang, Jinwei; Ferré-DAmaré, Adrian R (2016) Trying on tRNA for Size: RNase P and the T-box Riboswitch as Molecular Rulers. Biomolecules 6:
Zhang, Jinwei; Ferré-D'Amaré, Adrian R (2016) The tRNA Elbow in Structure, Recognition and Evolution. Life (Basel) 6:
Lau, Matthew W L; Ferré-D'Amaré, Adrian R (2016) In vitro evolution of coenzyme-independent variants from the glmS ribozyme structural scaffold. Methods 106:76-81
Meyer, Peter A; Socias, Stephanie; Key, Jason et al. (2016) Data publication with the structural biology data grid supports live analysis. Nat Commun 7:10882
Ferré-D'Amaré, Adrian R (2015) On the shoulders of giants. RNA 21:504-5
Zhang, Jinwei; Ferré-D'Amaré, Adrian R (2015) Post-crystallization Improvement of RNA Crystal Diffraction Quality. Methods Mol Biol 1316:13-24
Miao, Zhichao; Adamiak, Ryszard W; Blanchet, Marc-Frédérick et al. (2015) RNA-Puzzles Round II: assessment of RNA structure prediction programs applied to three large RNA structures. RNA 21:1066-84

Showing the most recent 10 out of 29 publications