We are entering a new and exciting era of ribosome research, in which the role of ribosome dynamics in protein synthesis is beginning to emerge. This proposal focuses on the role of the structural dynamics of the ribosome, and ribosomal RNA in particular, in the mechanism of translation. Our approach uses a combination of biochemistry, biophysics, genetics and crystallography. A major goal is to elucidate the mechanism of the coupled translocation of mRNA and tRNA. One strategy is to carry out an exhaustive screen for dominant-lethal mutations in elongation factor EF-G, which we predict will trap the ribosome in previously unobserved transient states of translocation. We then plan to crystallize these trapped complexes and solve their structures, to fill in gaps in our knowledge of the sub-steps of this fundamental process. To link these static, crystallographically-derived snapshots to ribosome dynamics, we will follow internal movements of the ribosome using FRET. We will take advantage of our ability to reconstitute active ribosomes containing fluorescent FRET pairs attached to specific positions, allowing us to follow ribosome dynamics in real time in both ensemble and single-molecule contexts. Mechanistic models derived from these studies can then be tested by creating pure populations of mutant ribosomes using methods that we have previously developed to target mutations to either rRNA or ribosomal proteins, and testing their functional properties in vitro.

Public Health Relevance

We propose to study the molecular basis of how the ribosome translates the genetic information encoded in messenger RNAs into proteins. The main impacts of our work on public health are that (i) bacterial ribosomes are prime targets for many classes of clinically important antibiotics and (ii) mutations in human ribosomal genes are responsible for a broad range of genetic diseases.

Agency
National Institute of Health (NIH)
Institute
National Institute of General Medical Sciences (NIGMS)
Type
Unknown (R35)
Project #
5R35GM118156-02
Application #
9252498
Study Section
Special Emphasis Panel (ZGM1-TRN-9 (MR))
Program Officer
Bender, Michael T
Project Start
2016-04-01
Project End
2021-03-31
Budget Start
2017-04-01
Budget End
2018-03-31
Support Year
2
Fiscal Year
2017
Total Cost
$695,064
Indirect Cost
$240,768
Name
University of California Santa Cruz
Department
Biochemistry
Type
Schools of Arts and Sciences
DUNS #
125084723
City
Santa Cruz
State
CA
Country
United States
Zip Code
95064
Noller, Harry F (2017) The parable of the caveman and the Ferrari: protein synthesis and the RNA world. Philos Trans R Soc Lond B Biol Sci 372:
Mohan, Srividya; Noller, Harry F (2017) Recurring RNA structural motifs underlie the mechanics of L1 stalk movement. Nat Commun 8:14285
Noller, Harry F; Lancaster, Laura; Zhou, Jie et al. (2017) The ribosome moves: RNA mechanics and translocation. Nat Struct Mol Biol 24:1021-1027
Noller, Harry F; Lancaster, Laura; Mohan, Srividya et al. (2017) Ribosome structural dynamics in translocation: yet another functional role for ribosomal RNA. Q Rev Biophys 50:e12