| Kundaje, Anshul; Middendorf, Manuel; Shah, Mihir et al. (2006) A classification-based framework for predicting and analyzing gene regulatory response. BMC Bioinformatics 7 Suppl 1:S5 |
| Kundaje, Anshul; Middendorf, Manuel; Gao, Feng et al. (2005) Combining sequence and time series expression data to learn transcriptional modules. IEEE/ACM Trans Comput Biol Bioinform 2:194-202 |
| Kuang, Rui; Ie, Eugene; Wang, Ke et al. (2005) Profile-based string kernels for remote homology detection and motif extraction. J Bioinform Comput Biol 3:527-50 |
| Foat, Barrett C; Houshmandi, S Sean; Olivas, Wendy M et al. (2005) Profiling condition-specific, genome-wide regulation of mRNA stability in yeast. Proc Natl Acad Sci U S A 102:17675-80 |
| Richards, Stephen; Liu, Yue; Bettencourt, Brian R et al. (2005) Comparative genome sequencing of Drosophila pseudoobscura: chromosomal, gene, and cis-element evolution. Genome Res 15:1-18 |
| Ziv, Etay; Koytcheff, Robin; Middendorf, Manuel et al. (2005) Systematic identification of statistically significant network measures. Phys Rev E Stat Nonlin Soft Matter Phys 71:016110 |
| Zhang, Xiang H-F; Leslie, Christina S; Chasin, Lawrence A (2005) Dichotomous splicing signals in exon flanks. Genome Res 15:768-79 |
| Leslie, Christina S; Eskin, Eleazar; Cohen, Adiel et al. (2004) Mismatch string kernels for discriminative protein classification. Bioinformatics 20:467-76 |
| Weston, Jason; Elisseeff, Andre; Zhou, Dengyong et al. (2004) Protein ranking: from local to global structure in the protein similarity network. Proc Natl Acad Sci U S A 101:6559-63 |
| Middendorf, Manuel; Kundaje, Anshul; Wiggins, Chris et al. (2004) Predicting genetic regulatory response using classification. Bioinformatics 20 Suppl 1:i232-40 |
Showing the most recent 10 out of 20 publications
