The Human Immunodeficiency Virus (HIV) rev protein functions to facilitate nuclear export of unspliced and incompletely spliced HIV mRNAs. Rev may also play a role in translation of these mRNAs. Recent results in our laboratory indicate that rev binds to intron-containing HIV-RNA in cells in a complex that also contains splicing factors. Additional data suggest that rev binds directly to snRNP proteins involved in splicing. These results support the notion that rev interacts with components of the splicing machinery to resolve splicing factors from the rev regulated RNAs. This is a revised proposal that describes experiments designed to further clarify the role of rev in RNA processing and transport. To do this , we will characterize the complexes that form between rev and RRE-containing RNA in transfected cells and in in vitro splicing extracts. These experiments will include an analysis of the cellular proteins and RNAs in these complexes. We will further analyze interactions between rev and cellular proteins and RNA in the absence of RRE-containing RNA. These experiments will determine whether rev participates in the formation of a novel snRNP particle. In these studies we will also investigate whether rev acts as a shuttle protein between the nucleus and the cytoplasm and whether rev is present in polysome complexes. A novel yeast system will be used to identify cellular proteins that interact with rev. Recently, we have identified an element at the 3' end of the Mason Pfizer Monkey Virus (MPMV) genome that substitutes for rev and the RRE in HIV expression and replication. We hypothesize that this element interacts directly with constitutive cellular factors to effectuate transport of intron containing RNA. The MPMV element will be further characterized using random and site- specific mutagenesis. In addition, we will attempt to identify cellular proteins binding to this element. Genes for such proteins will be cloned and the properties of the proteins will be analyzed. Finally, we will analyze RNA processing and structural protein expression in cells infected with virus containing the MPMV element. The long term goal of this research is to further clarify the mechanism of action of the HIV rev protein. Further insight into how this protein promotes the expression of unspliced RNA, might enable the design of novel inhibitors of rev function. Since rev is absolutely essential for virus replication, this could lead to new drugs to efficiently combat AIDS.

Agency
National Institute of Health (NIH)
Institute
National Institute of Allergy and Infectious Diseases (NIAID)
Type
Research Project (R01)
Project #
1R01AI034721-01A2
Application #
2069859
Study Section
AIDS and Related Research Study Section 3 (ARRC)
Project Start
1994-05-01
Project End
1998-01-31
Budget Start
1994-05-01
Budget End
1995-01-31
Support Year
1
Fiscal Year
1994
Total Cost
Indirect Cost
Name
University of Virginia
Department
Microbiology/Immun/Virology
Type
Schools of Medicine
DUNS #
001910777
City
Charlottesville
State
VA
Country
United States
Zip Code
22904
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Olivieri, Kevin; Scoggins, Robert M; Bor, Yeou-cherng et al. (2007) The envelope gene is a cytopathic determinant of CCR5 tropic HIV-1. Virology 358:23-38
Swartz, Jennifer E; Bor, Yeou-Cherng; Misawa, Yukiko et al. (2007) The shuttling SR protein 9G8 plays a role in translation of unspliced mRNA containing a constitutive transport element. J Biol Chem 282:19844-53
Levesque, Lyne; Bor, Yeou-Cherng; Matzat, Leah H et al. (2006) Mutations in tap uncouple RNA export activity from translocation through the nuclear pore complex. Mol Biol Cell 17:931-43
Forrest, Scott T; Barringhaus, Kurt G; Perlegas, Demetra et al. (2004) Intron retention generates a novel Id3 isoform that inhibits vascular lesion formation. J Biol Chem 279:32897-903
Alexander, Melissa; Bor, Yeou-cherng; Ravichandran, Kodimangalam S et al. (2004) Human immunodeficiency virus type 1 Nef associates with lipid rafts to downmodulate cell surface CD4 and class I major histocompatibility complex expression and to increase viral infectivity. J Virol 78:1685-96
Coyle, John H; Guzik, Brian W; Bor, Yeou-Cherng et al. (2003) Sam68 enhances the cytoplasmic utilization of intron-containing RNA and is functionally regulated by the nuclear kinase Sik/BRK. Mol Cell Biol 23:92-103
Jin, Li; Guzik, Brian W; Bor, Yeou-cherng et al. (2003) Tap and NXT promote translation of unspliced mRNA. Genes Dev 17:3075-86
Hammarskjold, M L (2001) Constitutive transport element-mediated nuclear export. Curr Top Microbiol Immunol 259:77-93
Matsumura, M E; Li, F; Berthoux, L et al. (2001) Vascular injury induces posttranscriptional regulation of the Id3 gene: cloning of a novel Id3 isoform expressed during vascular lesion formation in rat and human atherosclerosis. Arterioscler Thromb Vasc Biol 21:752-8

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