The identification of TET2 mutations and the subsequent discovery of DNMT3a and IDH1/2 mutations in myeloid malignancies has led to the realization that dynamic changes in DNA methylation patterns induced by somatic mutations are critical to hematopoietic transformation. The TET proteins are iron/?-ketoglutarate (Fe++/?-KG)-dependent dioxygenases and are able to modify 5-methylcytosine (5mC) on DNA to 5- hydroxy/formyl/carboxly-cytosine (5hmC, 5fC, 5caC), which leads to subsequent DNA demethylation. TET2 is targeted by somatic mutations in a spectrum of myeloid malignancies, including 10-20% of AML. Our laboratories have led studies characterizing the mutational spectra of TET2 in myeloid leukemias and in in vivo studies demonstrating that TET2 is a haploinsufficient tumor suppressor, which increases hematopoietic stem cell self-renewal and myeloid transformation. Supported by this award we were able to study in detail TET2 function in leukemia. We identified TET2 interacting proteins, generated disease models by modeling Tet2 alterations in concert with co-occurring myeloid disease alleles, delineated the relative role of Tet1 and Tet2 in hematopoietic function, employed techniques to map TET2-mediated 5hmC deposition at a genome-wide scale, and restored Tet2 activity in animal models and identified compounds that can target TET2-mutant myeloid leukemia. Moreover, we were able to show that TET2 mutations are an initiating event in clonal hematopoiesis (CH) that then ?seeds? the ground for additional somatic alterations, which then drive progression to myeloid transformation. This places us in an excellent position to address significant new questions relating to the molecular roles of TET2 in the initiation and progression of myeloid leukemia: 1) Are mutational order and/or cell compartment which acquires TET2/cooperating mutations critical in myeloid transformation? 2) Can we suppress disease progression, even in the presence of additional mutational events, if we restore wild-type TET2 expression and function? 3) Are there functional differences between TET2 loss and TET2 missense mutations that are seen in a subset of leukemia patients? We will address these important questions through the use of state-of-the art mouse models, epigenomic profiling techniques, and studies in primary patient samples to elucidate novel mechanisms of TET2-mediated transformation.

Public Health Relevance

The identification of TET2 mutations led to the realization that dynamic changes in DNA methylation patterns induced by acquired mutations are critical to hematopoietic transformation. We will use of state-of-the art mouse models, epigenomic profiling techniques, and studies in primary patient samples to elucidate novel mechanisms of TET2-mediated transformation in blood cancers.

Agency
National Institute of Health (NIH)
Institute
National Cancer Institute (NCI)
Type
Research Project (R01)
Project #
2R01CA173636-06
Application #
9613147
Study Section
Cancer Genetics Study Section (CG)
Program Officer
Duglas Tabor, Yvonne
Project Start
2013-02-07
Project End
2023-05-31
Budget Start
2018-07-01
Budget End
2019-05-31
Support Year
6
Fiscal Year
2018
Total Cost
Indirect Cost
Name
Sloan-Kettering Institute for Cancer Research
Department
Type
DUNS #
064931884
City
New York
State
NY
Country
United States
Zip Code
10065
Kunimoto, Hiroyoshi; Meydan, Cem; Nazir, Abbas et al. (2018) Cooperative Epigenetic Remodeling by TET2 Loss and NRAS Mutation Drives Myeloid Transformation and MEK Inhibitor Sensitivity. Cancer Cell 33:44-59.e8
Kleppe, Maria; Spitzer, Matthew H; Li, Sheng et al. (2018) Jak1 Integrates Cytokine Sensing to Regulate Hematopoietic Stem Cell Function and Stress Hematopoiesis. Cell Stem Cell 22:277
Kourtis, Nikos; Lazaris, Charalampos; Hockemeyer, Kathryn et al. (2018) Oncogenic hijacking of the stress response machinery in T cell acute lymphoblastic leukemia. Nat Med 24:1157-1166
Cimmino, Luisa; Neel, Benjamin G; Aifantis, Iannis (2018) Vitamin C in Stem Cell Reprogramming and Cancer. Trends Cell Biol 28:698-708
Bowman, Robert L; Busque, Lambert; Levine, Ross L (2018) Clonal Hematopoiesis and Evolution to Hematopoietic Malignancies. Cell Stem Cell 22:157-170
Kleppe, Maria; Koche, Richard; Zou, Lihua et al. (2018) Dual Targeting of Oncogenic Activation and Inflammatory Signaling Increases Therapeutic Efficacy in Myeloproliferative Neoplasms. Cancer Cell 33:29-43.e7
Shih, Alan H; Meydan, Cem; Shank, Kaitlyn et al. (2017) Combination Targeted Therapy to Disrupt Aberrant Oncogenic Signaling and Reverse Epigenetic Dysfunction in IDH2- and TET2-Mutant Acute Myeloid Leukemia. Cancer Discov 7:494-505
Kunimoto, Hiroyoshi; McKenney, Anna Sophia; Meydan, Cem et al. (2017) Aid is a key regulator of myeloid/erythroid differentiation and DNA methylation in hematopoietic stem/progenitor cells. Blood 129:1779-1790
Wang, Eric; Aifantis, Ioannis (2017) Targeting the Noncoding Genome: Superenhancers Meet Their Kryptonite. Cancer Discov 7:1065-1066
Kleppe, Maria; Spitzer, Matthew H; Li, Sheng et al. (2017) Jak1 Integrates Cytokine Sensing to Regulate Hematopoietic Stem Cell Function and Stress Hematopoiesis. Cell Stem Cell 21:489-501.e7

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