Specific interactions between proteins play pivotal roles in virtually all biological processes, yet our understanding of these important molecular interactions is still rather limited. Until recently, the only technique capable of yielding atomic-level information about biological macromolecules was x-ray diffraction. The application of two-dimensional nuclear magnetic resonance (2DNMR) spectroscopy to the study of small-to- medium-sized proteins in solution offers a second method for structural studies. This proposal involves the use of 2DNMR spectroscopy in both detailed structure/function studies and in the study of specific protein-protein interactions. Two different systems will be studied: 1) the phosphoenolpyruvate-dependent sugar transport system of bacteria, with particular focus on the phosphocarrier protein, histidine-containing protein (HPr) and 2) the Ca2+-regulatory protein, calmodulin, and its interactions with target enzymes. The proposed structure/function studies of HPr involve a combined approach of site-directed mutagenesis and 2DNMR. The complete sequence-specific assignments for the HPr spectrum (determined in the original granting period) will serve as the basis of these studies. This approach promises to yield much information relating the functional and structural consequences of single amino acid changes to a protein. New applications of 2DNMR experiments are proposed to study the interactions between HPr and its phosphoryl acceptor protein, factor III. 2DNMR studies to calmodulin-target enzyme interactions are made possible by the recent discovery of short linear sequences from target enzymes such as myosin light chain kinase that possess the properties expected for calmodulin-binding domains. These studies will take advantage of solid-phase peptide synthesis technology, allowing for """"""""mutation"""""""" of the sequences as well as incorporation of specific isotopes (i.e., 2H, 13C, 15N) to be used with special """"""""spectral editing"""""""" techniques.

Agency
National Institute of Health (NIH)
Institute
National Institute of Diabetes and Digestive and Kidney Diseases (NIDDK)
Type
Research Project (R01)
Project #
5R01DK035187-06
Application #
3233469
Study Section
Biophysical Chemistry Study Section (BBCB)
Project Start
1985-04-01
Project End
1993-03-31
Budget Start
1990-04-01
Budget End
1991-03-31
Support Year
6
Fiscal Year
1990
Total Cost
Indirect Cost
Name
University of Washington
Department
Type
Schools of Arts and Sciences
DUNS #
135646524
City
Seattle
State
WA
Country
United States
Zip Code
98195
Lee, S Y; Klevit, R E (2000) The whole is not the simple sum of its parts in calmodulin from S. cerevisiae. Biochemistry 39:4225-30
Rohl, C A; Boeckman, F A; Baker, C et al. (1999) Solution structure of the sodium channel inactivation gate. Biochemistry 38:855-61
Rajagopal, P; Jones, B E; Klevit, R E (1998) Solvent exchange rates of side-chain amide protons in proteins. J Biomol NMR 11:205-12
Rajagopal, P; Waygood, E B; Reizer, J et al. (1997) Demonstration of protein-protein interaction specificity by NMR chemical shift mapping. Protein Sci 6:2624-7
Jones, B E; Rajagopal, P; Klevit, R E (1997) Phosphorylation on histidine is accompanied by localized structural changes in the phosphocarrier protein, HPr from Bacillus subtilis. Protein Sci 6:2107-19
Jones, B E; Dossonnet, V; Kuster, E et al. (1997) Binding of the catabolite repressor protein CcpA to its DNA target is regulated by phosphorylation of its corepressor HPr. J Biol Chem 272:26530-5
Thapar, R; Nicholson, E M; Rajagopal, P et al. (1996) Influence of N-cap mutations on the structure and stability of Escherichia coli HPr. Biochemistry 35:11268-77
Peterkofsky, A; Seok, Y J; Amin, N et al. (1995) The Escherichia coli adenylyl cyclase complex: requirement of PTS proteins for stimulation by nucleotides. Biochemistry 34:8950-9
Pullen, K; Rajagopal, P; Branchini, B R et al. (1995) Phosphorylation of serine-46 in HPr, a key regulatory protein in bacteria, results in stabilization of its solution structure. Protein Sci 4:2478-86
Herzberg, O; Klevit, R (1994) Unraveling a bacterial hexose transport pathway. Curr Opin Struct Biol 4:814-22

Showing the most recent 10 out of 13 publications