Restriction Fragment Length polymorphisms in the human genome will be discovered using as probes single-copy DNA segments isolated from cosmids. These polymorphisms will be mapped to specific regions of human chromosomes. Multiple polymorphisms that map within single cosmid inserts and that are in linkage equilibrium will be extremely useful markers for assigning genes that cause serious genetic disease to specific regions of human chromosomes. In the near future such information can be expected to contribute to our ability to diagnose such diseases, and therefore to counsel subjects at risk. In the long run such information may lead to the isolation of defective genes and their normal counterparts, with important implications for the treatment of serious genetic diseases. Cosmids from a human genomic library will be screened using a novel blot hybridization technique to determine which ones have inserts homologous to genomic regions especially rich in polymorphisms. These cosmids will be studied in detail by subcloning into plasmid vectors, reiteration frequency screening to select single-copy probes, and genomic blotting to select probes that reveal polymorphisms. When multiple polymorphisms are found to map within a single cosmid insert, the extent of linkage disequilibrium will be determined by measuring allele and haplotype frequencies in a population of unrelated individuals. Family studies will then be used to confirm close linkage of such polymorphisms. Chromosomal locations will be determined by in situ hybridization to metaphase chromosomes.

Agency
National Institute of Health (NIH)
Institute
National Institute of General Medical Sciences (NIGMS)
Type
Research Project (R01)
Project #
5R01GM032500-03
Application #
3281391
Study Section
Mammalian Genetics Study Section (MGN)
Project Start
1983-07-01
Project End
1986-06-30
Budget Start
1985-07-01
Budget End
1986-06-30
Support Year
3
Fiscal Year
1985
Total Cost
Indirect Cost
Name
Oregon Health and Science University
Department
Type
Schools of Medicine
DUNS #
009584210
City
Portland
State
OR
Country
United States
Zip Code
97239
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Luo, X Y; Evans, G A; Litt, M (1990) Dinucleotide repeat polymorphism at the D11S420 locus. Nucleic Acids Res 18:5920
Guo, Z; Sharma, V; Patterson, D et al. (1990) Dinucleotide repeat polymorphism at the D21S168 locus. Nucleic Acids Res 18:5924
Luo, X Y; Evans, G A; Litt, M (1990) Dinucleotide repeat polymorphism at the D11S490 locus. Nucleic Acids Res 18:7470
Luty, J A; Guo, Z; Willard, H F et al. (1990) Five polymorphic microsatellite VNTRs on the human X chromosome. Am J Hum Genet 46:776-83
Guo, Z; Sharma, V; Patterson, D et al. (1990) TG repeat polymorphism at the D21S167 locus. Nucleic Acids Res 18:4967
Guo, Z; Sharma, V; Litt, M (1990) Dinucleotide repeat polymorphism at the D21S13E locus. Nucleic Acids Res 18:7470
Litt, M; Luty, J A (1990) Dinucleotide repeat polymorphism at the D6S89 locus. Nucleic Acids Res 18:4301
Litt, M; Sharma, V; Luty, J A (1990) Dinucleotide repeat polymorphism at the D11S35 locus. Nucleic Acids Res 18:5921
Litt, M; Buder, A; Vissing, H et al. (1989) An anonymous single-copy clone, p55-B1, from chromosome 17 identifies a TaqI RFLP [HGM9 no. D17S86] Nucleic Acids Res 17:2371

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