Many physiological processes involving cell membranes are thought to involve the lateral diffusion of mobile species within the membrane. The diffusion of these mobile species is hindered by the presence of immobile species, and it would be useful to be able to evaluate quantitatively the effect of obstacles on diffusion rates. The proposed research uses Monte Carlo calculations of diffusion on a lattice to examine several questions related to lateral diffusion of tracers in the presence of obstacles. What happens in a mixture of mobile and immobile obstacles? How does the diffusion constant of a tracer depend on the distance over which diffusion is measured? What happens if the obstacles are not randomly arranged, but form a diffusion-limited aggregate? The work will describe the concentration dependence of the lateral diffusion constant of membrane proteins, such as rhodopsin in rod outer segments. It will also be applicable to the diffusion of mobile redox carriers in mitochondria, chloroplasts, and endoplasmic reticulum.

Agency
National Institute of Health (NIH)
Institute
National Institute of General Medical Sciences (NIGMS)
Type
Research Project (R01)
Project #
1R01GM038133-01A1
Application #
3294203
Study Section
Biophysics and Biophysical Chemistry A Study Section (BBCA)
Project Start
1988-02-01
Project End
1990-01-31
Budget Start
1988-02-01
Budget End
1989-01-31
Support Year
1
Fiscal Year
1988
Total Cost
Indirect Cost
Name
University of California Davis
Department
Type
Earth Sciences/Resources
DUNS #
094878337
City
Davis
State
CA
Country
United States
Zip Code
95618
Saxton, Michael J (2014) Wanted: scalable tracers for diffusion measurements. J Phys Chem B 118:12805-17
Saxton, Michael J (2012) Wanted: a positive control for anomalous subdiffusion. Biophys J 103:2411-22
Saxton, Michael J (2010) Two-dimensional continuum percolation threshold for diffusing particles of nonzero radius. Biophys J 99:1490-9
Saxton, Michael J (2008) A biological interpretation of transient anomalous subdiffusion. II. Reaction kinetics. Biophys J 94:760-71
Saxton, Michael J (2007) A biological interpretation of transient anomalous subdiffusion. I. Qualitative model. Biophys J 92:1178-91
Saxton, Michael J (2007) Modeling 2D and 3D diffusion. Methods Mol Biol 400:295-321
Deverall, M A; Gindl, E; Sinner, E-K et al. (2005) Membrane lateral mobility obstructed by polymer-tethered lipids studied at the single molecule level. Biophys J 88:1875-86
Ng, Yuen-Keng; Lu, Xinghua; Gulacsi, Alexandra et al. (2003) Unexpected mobility variation among individual secretory vesicles produces an apparent refractory neuropeptide pool. Biophys J 84:4127-34
Saxton, M J (2001) Anomalous subdiffusion in fluorescence photobleaching recovery: a Monte Carlo study. Biophys J 81:2226-40
Saxton, M J (1997) Single-particle tracking: the distribution of diffusion coefficients. Biophys J 72:1744-53

Showing the most recent 10 out of 26 publications