(from the application): Events that are triggered by DNA fragmentation factor (DFF) during the terminal stages of apoptosis include internucleosomal DNA fragmentation and chromatin condensation. In its inactive form, DFF is a heterodimer composed of 45-kDa and 40-kDa protein subunits (also called ICAD and CAD/CPAN, respectively). Upon caspase-3 or -7 cleavage of recombinant DFF in vitro, DFF45 is cut, releasing DFF40, which forms homo-oligomers that possess potent endonuclease activity. Released DFF40 also initiates intranuclear chromatin condensation. Here we propose to elucidate the substructure and mechanisms of DFF45 and DFF40 action. We will engineer mutations in recombinant DNA encoding these proteins for their expression in E. coli and human cells to address the following specific aims: 1. For the chaperone andinhibitor subunit of DFF, DFF45: a. Identify DFF40 interaction surface(s) b. Create dominant-negative species c. Isolate DFF45 mutants that can constitutively activate DFF40 2. For the latent endonuclease subunit of DFF, DFF40: a. Identify DFF45 interaction surface(s) b. Identify homo-oligomerization interaction surfaces c. Locate the endonuclease active site d. Create auto-activated forms of DFF40 e. Create dominant-negative species

Agency
National Institute of Health (NIH)
Institute
National Institute of General Medical Sciences (NIGMS)
Type
Research Project (R01)
Project #
5R01GM059809-02
Application #
6498697
Study Section
Cell Development and Function Integrated Review Group (CDF)
Program Officer
Carter, Anthony D
Project Start
2001-02-01
Project End
2005-01-31
Budget Start
2002-02-01
Budget End
2003-01-31
Support Year
2
Fiscal Year
2002
Total Cost
$241,800
Indirect Cost
Name
University of Texas Sw Medical Center Dallas
Department
Biochemistry
Type
Schools of Medicine
DUNS #
City
Dallas
State
TX
Country
United States
Zip Code
75390
Widlak, Piotr; Garrard, William T (2006) The apoptotic endonuclease DFF40/CAD is inhibited by RNA, heparin and other polyanions. Apoptosis 11:1331-7
Liu, Zhe; Widlak, Piotr; Zou, Ying et al. (2006) A recombination silencer that specifies heterochromatin positioning and ikaros association in the immunoglobulin kappa locus. Immunity 24:405-15
Widlak, Piotr; Garrard, William T (2006) Unique features of the apoptotic endonuclease DFF40/CAD relative to micrococcal nuclease as a structural probe for chromatin. Biochem Cell Biol 84:405-10
Liu, Zhe; Garrard, William T (2005) Long-range interactions between three transcriptional enhancers, active Vkappa gene promoters, and a 3' boundary sequence spanning 46 kilobases. Mol Cell Biol 25:3220-31
Widlak, Piotr; Kalinowska, Magdalena; Parseghian, Missag H et al. (2005) The histone H1 C-terminal domain binds to the apoptotic nuclease, DNA fragmentation factor (DFF40/CAD) and stimulates DNA cleavage. Biochemistry 44:7871-8
Brekke, Katherine M; Garrard, William T (2004) Assembly and analysis of the mouse immunoglobulin kappa gene sequence. Immunogenetics 56:490-505
Widlak, Piotr; Lanuszewska, Joanna; Cary, Robert B et al. (2003) Subunit structures and stoichiometries of human DNA fragmentation factor proteins before and after induction of apoptosis. J Biol Chem 278:26915-22
Widlak, Piotr; Palyvoda, Olena; Kumala, Slawomir et al. (2002) Modeling apoptotic chromatin condensation in normal cell nuclei. Requirement for intranuclear mobility and actin involvement. J Biol Chem 277:21683-90
Widlak, P; Li, L Y; Wang, X et al. (2001) Action of recombinant human apoptotic endonuclease G on naked DNA and chromatin substrates: cooperation with exonuclease and DNase I. J Biol Chem 276:48404-9