Agency
National Institute of Health (NIH)
Institute
National Human Genome Research Institute (NHGRI)
Type
Research Project (R01)
Project #
2R01HG000783-04
Application #
2209037
Study Section
Special Emphasis Panel (ZRG2-GNM (03))
Project Start
1993-03-15
Project End
1999-06-30
Budget Start
1996-07-01
Budget End
1997-06-30
Support Year
4
Fiscal Year
1996
Total Cost
Indirect Cost
Name
Georgia Institute of Technology
Department
Biology
Type
Schools of Arts and Sciences
DUNS #
097394084
City
Atlanta
State
GA
Country
United States
Zip Code
30332
Lomsadze, Alexandre; Gemayel, Karl; Tang, Shiyuyun et al. (2018) Modeling leaderless transcription and atypical genes results in more accurate gene prediction in prokaryotes. Genome Res 28:1079-1089
Hoff, Katharina J; Lange, Simone; Lomsadze, Alexandre et al. (2016) BRAKER1: Unsupervised RNA-Seq-Based Genome Annotation with GeneMark-ET and AUGUSTUS. Bioinformatics 32:767-9
Tatusova, Tatiana; DiCuccio, Michael; Badretdin, Azat et al. (2016) NCBI prokaryotic genome annotation pipeline. Nucleic Acids Res 44:6614-24
Tang, Shiyuyun; Lomsadze, Alexandre; Borodovsky, Mark (2015) Identification of protein coding regions in RNA transcripts. Nucleic Acids Res 43:e78
Wu, G Albert; Prochnik, Simon; Jenkins, Jerry et al. (2014) Sequencing of diverse mandarin, pummelo and orange genomes reveals complex history of admixture during citrus domestication. Nat Biotechnol 32:656-62
Borodovsky, Mark; Lomsadze, Alex (2014) Gene identification in prokaryotic genomes, phages, metagenomes, and EST sequences with GeneMarkS suite. Curr Protoc Microbiol 32:Unit 1E.7.
Lomsadze, Alexandre; Burns, Paul D; Borodovsky, Mark (2014) Integration of mapped RNA-Seq reads into automatic training of eukaryotic gene finding algorithm. Nucleic Acids Res 42:e119
Burns, Paul D; Li, Yang; Ma, Jian et al. (2014) UnSplicer: mapping spliced RNA-Seq reads in compact genomes and filtering noisy splicing. Nucleic Acids Res 42:e25
Li, Yang; Li-Byarlay, Hongmei; Burns, Paul et al. (2013) TrueSight: a new algorithm for splice junction detection using RNA-seq. Nucleic Acids Res 41:e51
Antonov, Ivan; Baranov, Pavel; Borodovsky, Mark (2013) GeneTack database: genes with frameshifts in prokaryotic genomes and eukaryotic mRNA sequences. Nucleic Acids Res 41:D152-6

Showing the most recent 10 out of 48 publications