Current technology allows recording of brain electrical and/or magnetic activity from 256 or more scalp sites with high temporal resolution, plus concurrent behavioral and other psychophysiological time series, while dense human intracranial data are routinely acquired during some brain surgery and surgery planning procedures. Subject anatomic magnetic resonance (MR), computerized tomography (CT), and/or diffusion tensor (DT) head images may also be available. Standard analysis approaches extract only a small part of the rich information about human brain dynamics contained in these data. We propose a collaboration between the UCSD Swartz Center for Computational Neuroscience (home to the EEGLAB software environment development project), the UCSD Center for Research in Biological Systems (home to the Biomedical Informatics Research Network (BIRN) coordinating center), and leaders in six other human electrophysiological research communities to develop a public 'A Human Electrophysiology, Associated Anatomic Data and Integrated Tool (HeadIT) resource'. This framework will be built on the BIRN Data Repository framework (www.nbirn.net/bdr), thereby expanding its scope and capabilities. The HeadIT resource will share existing, high- quality, well-documented data sets, allowing their archival preservation and continued public availability for re-analysis and meta-analysis with increasingly powerful analysis tools. Initially, the HeadIT repository, extending a foundational database within the BIRN Data Repository will contain a rich collection of human electrophysiological data contributed by SCCN and others and physically distributed across storage nodes hosted by centers focused on seven research fields: epilepsy, neurorehabilitation, attention, magnetic recording, child development, neuroinformatics, and multimodal imaging. The HeadIT resource will include a software facility for accessing and analyzing repository data in the EEGLAB (sccn.ucsd.edu/eeglab) and other widely-used Matlab-based electrophysiological tool environments. EEGLAB will be extended to include a foundational tool set for performing meta-analyses across more than one archived HeadIT study. We will develop minimal information standards and quality assurance tests for contributed HeadIT data, a facility for interactive data visualization, and will test and validate the operability of the HeadIT resource via named ongoing research collaborations that will serve as the initial user community for tool and data framework development and testing.

Public Health Relevance

The proposed 'A Human Electrophysiology, Associated Anatomic Data and Integrated Tool (HeadIT) Resource'will allow re-analysis of freely available recordings of brain activity and associated behavioral and physiologic measures using freely available analysis tools. This will allow large multi-study meta-analyses for patterns not visible in any single study, re-analyses to validate previously published conclusions from existing data, and application of successively more advanced tools to complex and costly data collected in a wide range of clinical and basic research areas.

Agency
National Institute of Health (NIH)
Institute
National Institute of Mental Health (NIMH)
Type
Research Project (R01)
Project #
5R01MH084819-02
Application #
7807024
Study Section
Special Emphasis Panel (ZRG1-BST-G (50))
Program Officer
Freund, Michelle
Project Start
2009-04-17
Project End
2012-02-28
Budget Start
2010-05-01
Budget End
2011-02-28
Support Year
2
Fiscal Year
2010
Total Cost
$306,444
Indirect Cost
Name
University of California San Diego
Department
Biostatistics & Other Math Sci
Type
Schools of Arts and Sciences
DUNS #
804355790
City
La Jolla
State
CA
Country
United States
Zip Code
92093
Kleifges, Kelly; Bigdely-Shamlo, Nima; Kerick, Scott E et al. (2017) BLINKER: Automated Extraction of Ocular Indices from EEG Enabling Large-Scale Analysis. Front Neurosci 11:12
Hsu, Sheng-Hsiou; Mullen, Tim R; Jung, Tzyy-Ping et al. (2016) Real-Time Adaptive EEG Source Separation Using Online Recursive Independent Component Analysis. IEEE Trans Neural Syst Rehabil Eng 24:309-19
Cruz, Gabriela; Miyakoshi, Makoto; Makeig, Scott et al. (2016) ERPs and their brain sources in perceptual and conceptual prospective memory tasks: Commonalities and differences between the two tasks. Neuropsychologia 91:173-185
Ball, Kenneth; Bigdely-Shamlo, Nima; Mullen, Tim et al. (2016) PWC-ICA: A Method for Stationary Ordered Blind Source Separation with Application to EEG. Comput Intell Neurosci 2016:9754813
Bigdely-Shamlo, Nima; Makeig, Scott; Robbins, Kay A (2016) Preparing Laboratory and Real-World EEG Data for Large-Scale Analysis: A Containerized Approach. Front Neuroinform 10:7
Mullen, Tim R; Kothe, Christian A E; Chi, Yu Mike et al. (2015) Real-Time Neuroimaging and Cognitive Monitoring Using Wearable Dry EEG. IEEE Trans Biomed Eng 62:2553-67
Hsu, Sheng-Hsiou; Mullen, Tim; Jung, Tzyy-Ping et al. (2014) Online recursive independent component analysis for real-time source separation of high-density EEG. Conf Proc IEEE Eng Med Biol Soc 2014:3845-8
Bigdely-Shamlo, Nima; Mullen, Tim; Kreutz-Delgado, Kenneth et al. (2013) Measure projection analysis: a probabilistic approach to EEG source comparison and multi-subject inference. Neuroimage 72:287-303
Bigdely-Shamlo, Nima; Kreutz-Delgado, Ken; Kothe, Christian et al. (2013) EyeCatch: data-mining over half a million EEG independent components to construct a fully-automated eye-component detector. Conf Proc IEEE Eng Med Biol Soc 2013:5845-8
Mullen, Tim; Kothe, Christian; Chi, Yu Mike et al. (2013) Real-time modeling and 3D visualization of source dynamics and connectivity using wearable EEG. Conf Proc IEEE Eng Med Biol Soc 2013:2184-7

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