Rates of spontaneous mutation vary greatly among organisms and among genes. We have previously described mutation rates that are characteristic of certain broad groups of organisms. (1) A new description of the mutation process has now been found for simple RNA viruses (riboviruses). When applied to published mutation frequencies, we find a central value of about 0.76 per genome replication. As a result of this high rate, riboviruses have nearly maximum sustainable mutation rates, and very small increases lead to extinction. (2) The characteristic mutation rate for DNA-based microbes is 0.0034 per genome replication. The question arises whether this rate is also to be found in extremophiles, and specifically in Archeons. We are gathering information about the mutation process in the Archeon Sulfolobus acidocaldarius growing at pH 3.5 at 75?C, in order to determine the mutation rate accurately and to characterize the kinds of mutations that arise spontaneously.

Agency
National Institute of Health (NIH)
Institute
National Institute of Environmental Health Sciences (NIEHS)
Type
Intramural Research (Z01)
Project #
1Z01ES065016-01
Application #
6413539
Study Section
(LMG)
Project Start
Project End
Budget Start
Budget End
Support Year
1
Fiscal Year
2000
Total Cost
Indirect Cost
Name
U.S. National Inst of Environ Hlth Scis
Department
Type
DUNS #
City
State
Country
United States
Zip Code
Kissling, Grace E; Grogan, Dennis W; Drake, John W (2013) Confounders of mutation-rate estimators: selection and phenotypic lag in Thermus thermophilus. Mutat Res 749:16-20
García-Villada, Libertad; Drake, John W (2013) Experimental selection reveals a trade-off between fecundity and lifespan in the coliphage Qß. Open Biol 3:130043
Drake, John W (2012) Contrasting mutation rates from specific-locus and long-term mutation-accumulation procedures. G3 (Bethesda) 2:483-5
García-Villada, Libertad; Drake, John W (2012) The three faces of riboviral spontaneous mutation: spectrum, mode of genome replication, and mutation rate. PLoS Genet 8:e1002832
Burch, Lauranell H; Zhang, Leilei; Chao, Frank G et al. (2011) The bacteriophage T4 rapid-lysis genes and their mutational proclivities. J Bacteriol 193:3537-45
Drake, John W (2009) Avoiding dangerous missense: thermophiles display especially low mutation rates. PLoS Genet 5:e1000520
Drake, John W (2007) Mutations in clusters and showers. Proc Natl Acad Sci U S A 104:8203-4
Mackwan, Reena R; Carver, Geraldine T; Drake, John W et al. (2007) An unusual pattern of spontaneous mutations recovered in the halophilic archaeon Haloferax volcanii. Genetics 176:697-702
Drake, John W (2007) Too many mutants with multiple mutations. Crit Rev Biochem Mol Biol 42:247-58
Drake, John W (2006) Chaos and order in spontaneous mutation. Genetics 173:1-8

Showing the most recent 10 out of 15 publications